Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 0 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPDJANJP_9 | 69261 | 71235 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| OPDJANJP_13 | 45223 | 46428 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| OPDJANJP_13 | 23269 | 24171 | CepA-44 | ARO:3006225 | CepA-44 | 100.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPDJANJP_13 | 23269 | 24171 | cepA-44 | Unknown Beta-lactam | 100.00 | 100.00 | U05885 |
| OPDJANJP_9 | 69309 | 71234 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPDJANJP_13 | 23272 | 24171 | cepA-44 | extended-spectrum class A beta-lactamase CepA-44 | ALLELEX | 100.00 | 100.00 | WP_032579291.1 |
| OPDJANJP_13 | 46453 | 46962 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OPDJANJP_9 | 69309 | 71231 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| OPDJANJP_13 | 45223 | 46425 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OPDJANJP_31 | 7688 | 8881 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 100.00 | 100.00 | BAA77277 |
| OPDJANJP_31 | 7688 | 8881 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.90 | 100.00 | BAA77275 |
| OPDJANJP_31 | 7688 | 8881 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPDJANJP_1 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_3 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_4 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_5 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_6 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_7 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_8 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_9 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_10 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_11 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_12 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_13 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_14 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_15 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_16 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_17 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_18 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_19 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_20 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_21 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_22 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_23 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_24 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_25 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_26 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_29 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_30 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_31 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_32 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_33 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_34 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_35 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_36 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_37 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_38 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_39 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_40 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_41 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_44 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_45 | 1.0 | 0.0 | 1.0 |
| OPDJANJP_47 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_48 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_49 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_50 | 0.0 | 1.0 | 0.0 |
| OPDJANJP_52 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPDJANJP_23 | 30740 | 38997 | False | Siphoviridae | VOG7238, |
| OPDJANJP_25 | 156867 | 166614 | False | Unknown | VOG4572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)