Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 0 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHKCMDBM_13 | 87333 | 89258 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| GHKCMDBM_20 | 75912 | 76814 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
| GHKCMDBM_20 | 13764 | 14498 | ErmG | ARO:3000522 | ErmG | 98.77 | 100.00 | L42817.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GHKCMDBM_13 | 87333 | 89258 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| GHKCMDBM_20 | 75912 | 76814 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
| GHKCMDBM_20 | 13764 | 14498 | erm(G) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.18 | 100.00 | M15332 |
| GHKCMDBM_20 | 11529 | 12992 | msr(D) | Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 97.54 | 100.00 | AF274302 |
| GHKCMDBM_20 | 10189 | 11403 | mef(A) | Erythromycin, Azithromycin | 94.24 | 99.75 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GHKCMDBM_13 | 87333 | 89255 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| GHKCMDBM_20 | 75915 | 76814 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| GHKCMDBM_20 | 13764 | 14495 | erm(G) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(G) | BLASTX | 99.18 | 100.00 | WP_063844791.1 |
| GHKCMDBM_20 | 11529 | 12989 | msr(D) | ABC-F type ribosomal protection protein Msr(D) | BLASTX | 97.13 | 100.00 | WP_000420313.1 |
| GHKCMDBM_20 | 10189 | 11412 | mef(A) | macrolide efflux MFS transporter Mef(A) | BLASTX | 96.57 | 100.00 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GHKCMDBM_27 | 55915 | 57108 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 100.00 | 100.00 | BAA77277 |
| GHKCMDBM_27 | 55915 | 57108 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.90 | 100.00 | BAA77275 |
| GHKCMDBM_27 | 55915 | 57108 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 100.00 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHKCMDBM_1 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_2 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_3 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_4 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_5 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_6 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_7 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_8 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_9 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_10 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_11 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_12 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_13 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_14 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_15 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_16 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_17 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_18 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_19 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_20 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_21 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_22 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_23 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_24 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_25 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_27 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_28 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_29 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_30 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_31 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_32 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_33 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_34 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_35 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_36 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_37 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_39 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_40 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_41 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_42 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_43 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_44 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_46 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_50 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_52 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_53 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_54 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_55 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_56 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_58 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_59 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_62 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_63 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_64 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_65 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_71 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_72 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_74 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_75 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_79 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_80 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_81 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_82 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_85 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_86 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_89 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_90 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_93 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_96 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_97 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_98 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_99 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_100 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_101 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_102 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_103 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_104 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_105 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_106 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_107 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_108 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_111 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_112 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_113 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_114 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_116 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_118 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_120 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_121 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_122 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_123 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_125 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_126 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_127 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_128 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_129 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_130 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_132 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_133 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_134 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_135 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_136 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_137 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_139 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_140 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_141 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_142 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_143 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_144 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_145 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_146 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_147 | 0.0 | 1.0 | 0.0 |
| GHKCMDBM_149 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_150 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_152 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_154 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_155 | 1.0 | 0.0 | 1.0 |
| GHKCMDBM_156 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHKCMDBM_133 | 7565 | 14491 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)