Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DEGJHKBI_139 | 8646 | 8452 | CspA | 6.30e-29 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DEGJHKBI_1 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_2 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_4 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_5 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_6 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_7 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_8 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_9 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_10 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_11 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_12 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_13 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_14 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_15 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_19 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_20 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_21 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_23 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_24 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_25 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_26 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_29 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_30 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_31 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_32 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_35 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_37 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_46 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_57 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_68 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_79 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_89 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_99 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_102 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_103 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_104 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_105 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_106 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_107 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_108 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_109 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_110 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_111 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_113 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_114 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_115 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_116 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_117 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_118 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_119 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_120 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_121 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_122 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_123 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_124 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_125 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_126 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_127 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_128 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_129 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_130 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_131 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_132 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_133 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_134 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_135 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_136 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_137 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_139 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_140 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_141 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_142 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_143 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_144 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_145 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_146 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_147 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_148 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_149 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_150 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_151 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_152 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_154 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_155 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_156 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_157 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_159 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_161 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_162 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_163 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_164 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_165 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_166 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_167 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_168 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_169 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_171 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_174 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_175 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_176 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_177 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_178 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_179 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_180 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_182 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_183 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_184 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_185 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_186 | 1.0 | 0.0 | 1.0 |
| DEGJHKBI_187 | 0.0 | 1.0 | 0.0 |
| DEGJHKBI_188 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DEGJHKBI_106 | 55034 | 59590 | False | Siphoviridae / Podoviridae | VOG3557, VOG2350, VOG0774, VOG6140, VOG0862, VOG8520 |
| DEGJHKBI_106 | 69765 | 92910 | False | Siphoviridae | VOG4972, VOG1345, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG9813, VOG0801, VOG3462, VOG10972, VOG0565, VOG9997 |
| DEGJHKBI_124 | 26720 | 28870 | False | Unknown | VOG0862, VOG0275 |
| DEGJHKBI_135 | 21031 | 27818 | False | Myoviridae / Siphoviridae | VOG0414, VOG4552, VOG0694, VOG9667, VOG0535, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189 |
| DEGJHKBI_135 | 32598 | 58662 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG10263, VOG6298, VOG3298, VOG8917, VOG9888, VOG0703 |
| DEGJHKBI_178 | 42687 | 65503 | False | Siphoviridae | VOG0703, VOG0641, VOG4705, VOG4334, VOG8438, VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG4552, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1345, VOG4544, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)