Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JKODFAGC_129 | 47328 | 47522 | CspA | 3.14e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JKODFAGC_107 | 8377 | 9407 | repUS67 | 1038 / 1039 | 87.67 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JKODFAGC_1 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_2 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_3 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_4 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_5 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_6 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_7 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_8 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_9 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_10 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_11 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_12 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_13 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_14 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_16 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_17 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_18 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_19 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_20 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_21 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_22 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_23 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_24 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_25 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_26 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_27 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_28 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_30 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_31 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_33 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_34 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_35 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_37 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_39 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_40 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_41 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_42 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_43 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_44 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_45 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_46 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_47 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_48 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_51 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_57 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_68 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_79 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_90 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_101 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_105 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_106 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_107 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_108 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_109 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_110 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_111 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_112 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_113 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_114 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_115 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_116 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_117 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_118 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_119 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_120 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_121 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_122 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_123 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_124 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_125 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_126 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_127 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_128 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_129 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_130 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_131 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_132 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_133 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_134 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_135 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_136 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_137 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_138 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_139 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_140 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_141 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_142 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_143 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_144 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_145 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_146 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_147 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_148 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_149 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_151 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_152 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_154 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_155 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_156 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_157 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_158 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_159 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_160 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_161 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_162 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_163 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_164 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_165 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_166 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_167 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_168 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_170 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_171 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_173 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_174 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_175 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_176 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_177 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_178 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_179 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_181 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_182 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_183 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_184 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_185 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_186 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_187 | 1.0 | 0.0 | 1.0 |
| JKODFAGC_189 | 0.0 | 1.0 | 0.0 |
| JKODFAGC_190 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JKODFAGC_107 | 12942 | 33671 | False | Siphoviridae | VOG4544, VOG5721, VOG6031, VOG6524, VOG6246, VOG6941, VOG6036, VOG7629, VOG7628, VOG5534, VOG4783, VOG10609, VOG9091, VOG0648, VOG0753, VOG0054 |
| JKODFAGC_139 | 22237 | 23552 | False | Unknown | VOG0703, VOG9888, VOG8917, VOG3298 |
| JKODFAGC_142 | 15741 | 39079 | False | Siphoviridae | VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG9813, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG1345, VOG4972 |
| JKODFAGC_147 | 21121 | 27908 | False | Myoviridae / Siphoviridae | VOG0414, VOG4552, VOG0694, VOG9667, VOG0535, VOG0283, VOG0514, VOG0226, VOG4566, VOG0189 |
| JKODFAGC_147 | 32688 | 51070 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699 |
Phigaro v2.4.0 (Database: Jan. 2024 release)