Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FJGCGCIN_1 | 646592 | 645888 | WalR | 1.89e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FJGCGCIN_4 | 32522 | 33619 | repUS73 | 1101 / 1101 | 93.91 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FJGCGCIN_1 | 0.0 | 1.0 | 0.0 |
| FJGCGCIN_2 | 1.0 | 0.0 | 1.0 |
| FJGCGCIN_3 | 1.0 | 0.0 | 1.0 |
| FJGCGCIN_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FJGCGCIN_1 | 87848 | 113601 | False | Siphoviridae | VOG0054, VOG1637, VOG8294, VOG4783, VOG7896, VOG4334, VOG4626, VOG1637, VOG3463, VOG4619, VOG0801, VOG4910, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4572, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG0198, VOG9671, VOG0044 |
| FJGCGCIN_1 | 649557 | 656078 | False | Siphoviridae | VOG4553, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
| FJGCGCIN_1 | 1758155 | 1789083 | False | Siphoviridae | VOG3549, VOG2703, VOG0535, VOG5046, VOG0189, VOG0327, VOG3480, VOG3468, VOG1297, VOG6970, VOG0044, VOG9671, VOG0198, VOG1315, VOG1183, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG5660, VOG0724, VOG0799, VOG0725, VOG6163, VOG0801, VOG3462, VOG7548, VOG4904, VOG4626, VOG4334, VOG7896 |
| FJGCGCIN_1 | 1818464 | 1823969 | False | Siphoviridae | VOG11003, VOG6495, VOG0181, VOG7298, VOG1309, VOG0186, VOG4566 |
| FJGCGCIN_1 | 1839241 | 1893304 | False | Siphoviridae | VOG0044, VOG4732, VOG7129, VOG0198, VOG0638, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG0723, VOG5660, VOG0799, VOG0725, VOG1323, VOG3636, VOG0801, VOG3462, VOG3463, VOG4626, VOG4334, VOG7896, VOG8868, VOG8294, VOG1637, VOG0054, VOG3685, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294 |
| FJGCGCIN_1 | 2793483 | 2819276 | False | Siphoviridae | VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG7810, VOG4841, VOG0198, VOG0044, VOG0044, VOG5883 |
| FJGCGCIN_1 | 3026322 | 3053587 | False | Siphoviridae | VOG4599, VOG4605, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG1315, VOG0198, VOG3643, VOG0044, VOG0044, VOG5883, VOG1551, VOG10015, VOG6005, VOG0189, VOG4799, VOG0514 |
Phigaro v2.4.0 (Database: Jan. 2024 release)