Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NEOCCNIA_12 | 63069 | 62875 | CspA | 4.37e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NEOCCNIA_1 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_2 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_3 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_4 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_5 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_6 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_7 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_8 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_9 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_10 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_11 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_12 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_13 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_14 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_15 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_16 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_17 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_18 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_19 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_20 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_21 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_22 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_23 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_24 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_25 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_26 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_27 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_28 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_29 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_31 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_32 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_33 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_34 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_39 | 0.0 | 1.0 | 0.0 |
| NEOCCNIA_47 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_52 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_55 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_56 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_58 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_64 | 1.0 | 0.0 | 1.0 |
| NEOCCNIA_67 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NEOCCNIA_1 | 205324 | 224952 | False | Siphoviridae | VOG3463, VOG3462, VOG0801, VOG6163, VOG0209, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG0866, VOG9312, VOG4581, VOG4841, VOG0866, VOG0198, VOG0686 |
| NEOCCNIA_8 | 52046 | 55266 | False | Siphoviridae | VOG0535, VOG0283, VOG0514, VOG0226 |
| NEOCCNIA_8 | 60837 | 87837 | False | Myoviridae | VOG0198, VOG4972, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG4711, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG10263, VOG6298, VOG3298, VOG8917, VOG0703, VOG8294, VOG4013 |
| NEOCCNIA_17 | 11474 | 44231 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG5007, VOG4599, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG7043, VOG1183, VOG8065, VOG3307, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG2228 |
Phigaro v2.4.0 (Database: Jan. 2024 release)