Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPCKHBNK_1 | 993759 | 994496 | ErmB | ARO:3000375 | ErmB | 99.59 | 98.79 | AF242872.1 |
| GPCKHBNK_1 | 39823 | 41199 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| GPCKHBNK_1 | 37710 | 39629 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| GPCKHBNK_1 | 1314729 | 1315967 | tet(W) | ARO:3000194 | tet(W) | 97.38 | 64.48 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPCKHBNK_1 | 993759 | 994496 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.86 | 100.00 | X72021 |
| GPCKHBNK_1 | 39823 | 41199 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| GPCKHBNK_1 | 37710 | 39629 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| GPCKHBNK_1 | 1314729 | 1316647 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.01 | 99.95 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPCKHBNK_1 | 993762 | 994496 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 99.59 | 100.00 | WP_001038795.1 |
| GPCKHBNK_1 | 37710 | 39626 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| GPCKHBNK_1 | 39823 | 41196 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GPCKHBNK_1 | 43579 | 44286 | rep22 | 708 / 708 | 100.00 | X03408 |
| GPCKHBNK_1 | 28232 | 29437 | repUS43 | 1206 / 1206 | 100.00 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPCKHBNK_1 | 0.0 | 1.0 | 0.0 |
| GPCKHBNK_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPCKHBNK_1 | 119464 | 145594 | False | Siphoviridae | VOG0198, VOG1345, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1353, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG5007, VOG0648, VOG0861, VOG7017 |
Phigaro v2.4.0 (Database: Jan. 2024 release)