Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KACBOCAG_1 | 990914 | 991615 | WalR | 3.50e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KACBOCAG_11 | 7670 | 8605 | rep28 | 943 / 936 | 83.56 | CP005948 |
| KACBOCAG_6 | 6082 | 6650 | rep38 | 571 / 903 | 81.09 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KACBOCAG_1 | 0.0 | 1.0 | 0.0 |
| KACBOCAG_2 | 0.0 | 1.0 | 0.0 |
| KACBOCAG_3 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_4 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_5 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_6 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_7 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_8 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_9 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_10 | 1.0 | 0.0 | 1.0 |
| KACBOCAG_11 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KACBOCAG_1 | 15277 | 40232 | False | Siphoviridae | VOG10957, VOG10972, VOG4599, VOG4605, VOG8263, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG3102, VOG4841, VOG0198 |
| KACBOCAG_1 | 40595 | 47001 | False | Siphoviridae | VOG6970, VOG3643, VOG0044, VOG1177, VOG0189, VOG8647, VOG0514, VOG0226, VOG0283 |
| KACBOCAG_1 | 1805874 | 1836669 | False | Myoviridae | VOG0198, VOG0638, VOG0045, VOG4699, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7732, VOG10914, VOG3298, VOG3298, VOG9601, VOG0703 |
| KACBOCAG_1 | 2362782 | 2386484 | False | Myoviridae | VOG3298, VOG3298, VOG0565, VOG0870, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG4918, VOG6163, VOG4545, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4564 |
Phigaro v2.4.0 (Database: Jan. 2024 release)