Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DFCCAADA_137 | 28541 | 27837 | WalR | 1.45e-114 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| DFCCAADA_64 | 16337 | 16531 | CspR | 8.03e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| DFCCAADA_64 | 16337 | 16534 | CspA | 1.23e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DFCCAADA_39 | 141 | 1076 | rep28 | 936 / 936 | 100.00 | CP005948 |
| DFCCAADA_26 | 2341 | 3401 | repUS73 | 1061 / 1101 | 97.17 | CP002654 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DFCCAADA_1 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_2 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_4 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_5 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_6 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_7 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_8 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_9 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_10 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_11 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_12 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_13 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_14 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_15 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_16 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_17 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_18 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_19 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_20 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_21 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_22 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_23 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_24 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_25 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_26 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_27 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_29 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_30 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_31 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_32 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_35 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_36 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_37 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_38 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_39 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_40 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_41 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_42 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_43 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_44 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_45 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_46 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_47 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_48 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_49 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_54 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_56 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_57 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_58 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_59 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_60 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_61 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_62 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_64 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_65 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_66 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_67 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_68 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_72 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_73 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_75 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_77 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_80 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_84 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_86 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_89 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_91 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_93 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_94 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_95 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_98 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_99 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_100 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_101 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_102 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_103 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_104 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_105 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_106 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_108 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_113 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_116 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_121 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_131 | 1.0 | 0.0 | 1.0 |
| DFCCAADA_132 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_137 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_139 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_140 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_144 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_147 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_148 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_149 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_150 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_153 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_156 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_158 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_159 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_161 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_167 | 0.0 | 1.0 | 0.0 |
| DFCCAADA_170 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DFCCAADA_156 | 147329 | 174747 | False | Siphoviridae | VOG0054, VOG0753, VOG9998, VOG10957, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG0198, VOG3643 |
Phigaro v2.4.0 (Database: Jan. 2024 release)