Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFAGGDOC_45 | 66420 | 65815 | WalR | 7.67e-92 | transcriptional regulatory protein | 81.68 | 85.90 | EPH95667 |
| IFAGGDOC_56 | 51189 | 50992 | CspR | 5.22e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFAGGDOC_1 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_2 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_3 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_4 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_5 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_6 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_7 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_8 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_9 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_10 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_11 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_12 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_13 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_14 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_15 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_16 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_17 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_18 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_19 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_20 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_21 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_22 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_23 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_24 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_25 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_26 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_27 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_28 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_29 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_30 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_31 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_32 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_33 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_34 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_35 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_36 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_37 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_38 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_39 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_40 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_41 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_42 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_43 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_44 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_45 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_46 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_47 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_48 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_49 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_50 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_51 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_52 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_53 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_54 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_55 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_56 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_57 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_58 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_59 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_60 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_61 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_62 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_63 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_64 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_65 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_66 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_67 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_73 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_75 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_76 | 1.0 | 0.0 | 1.0 |
| IFAGGDOC_78 | 0.0 | 1.0 | 0.0 |
| IFAGGDOC_80 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFAGGDOC_14 | 65450 | 69041 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556 |
| IFAGGDOC_56 | 3 | 28617 | False | Siphoviridae | VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG3643, VOG6131, VOG2820, VOG9759, VOG9741, VOG4693, VOG6623, VOG9860, VOG9667, VOG11003, VOG0226, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)