Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DLLLPEHC_5 | 5730860 | 5731675 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| DLLLPEHC_5 | 5501313 | 5503287 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| DLLLPEHC_5 | 2339963 | 2341909 | tet(Q) | ARO:3000191 | tet(Q) | 97.81 | 98.63 | Z21523.1 |
| DLLLPEHC_5 | 1535778 | 1536602 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| DLLLPEHC_5 | 1534685 | 1535575 | ErmF | ARO:3000498 | ErmF | 98.50 | 111.28 | M17124.1 |
| DLLLPEHC_5 | 1528644 | 1529780 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| DLLLPEHC_5 | 93952 | 94449 | nimJ | ARO:3007112 | nimJ | 98.18 | 100.00 | KJ816753.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DLLLPEHC_5 | 1535778 | 1536602 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| DLLLPEHC_5 | 5730860 | 5731675 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| DLLLPEHC_5 | 5501313 | 5503238 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| DLLLPEHC_5 | 1528644 | 1529810 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| DLLLPEHC_5 | 1534775 | 1535575 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DLLLPEHC_5 | 93952 | 94449 | nimJ | Metronidazole | 99.20 | 100.00 | NZ_JH815495 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DLLLPEHC_5 | 1535781 | 1536602 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| DLLLPEHC_5 | 5730863 | 5731675 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| DLLLPEHC_5 | 5501316 | 5503238 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| DLLLPEHC_5 | 1528647 | 1529810 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| DLLLPEHC_5 | 1534775 | 1535572 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DLLLPEHC_5 | 93955 | 94449 | nimJ | 5-nitroimidazole reductase NimJ | BLASTX | 98.18 | 100.00 | WP_005812825.1 |
| DLLLPEHC_5 | 2339963 | 2341876 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.96 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DLLLPEHC_1 | 1.0 | 0.0 | 1.0 |
| DLLLPEHC_2 | 1.0 | 0.0 | 1.0 |
| DLLLPEHC_3 | 1.0 | 0.0 | 1.0 |
| DLLLPEHC_4 | 1.0 | 0.0 | 1.0 |
| DLLLPEHC_5 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_6 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_7 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_8 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_9 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_10 | 0.0 | 1.0 | 0.0 |
| DLLLPEHC_11 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DLLLPEHC_5 | 3165262 | 3170290 | False | Siphoviridae | VOG0204, |
| DLLLPEHC_5 | 4188616 | 4194425 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)