Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NKHJAEOE_42 | 260749 | 260045 | WalR | 8.10e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| NKHJAEOE_55 | 254337 | 254534 | CspR | 1.55e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| NKHJAEOE_64 | 7194 | 8228 | rep38 | 1046 / 1104 | 82.70 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NKHJAEOE_1 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_2 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_4 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_5 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_6 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_7 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_10 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_11 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_13 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_14 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_16 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_17 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_19 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_21 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_23 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_24 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_25 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_26 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_27 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_28 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_29 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_30 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_31 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_32 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_33 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_35 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_36 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_37 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_38 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_39 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_40 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_41 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_42 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_43 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_44 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_45 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_47 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_48 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_49 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_51 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_52 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_53 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_54 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_55 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_56 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_58 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_59 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_60 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_62 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_64 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_66 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_67 | 0.0 | 1.0 | 0.0 |
| NKHJAEOE_68 | 1.0 | 0.0 | 1.0 |
| NKHJAEOE_69 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NKHJAEOE_55 | 171155 | 181826 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| NKHJAEOE_55 | 276279 | 280834 | False | Unknown | VOG8241, VOG1309, VOG0186, VOG4566, VOG0226, VOG11003 |
Phigaro v2.4.0 (Database: Jan. 2024 release)