Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DOLIIFAH_28 | 120 | 824 | WalR | 6.88e-114 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DOLIIFAH_50 | 19107 | 19304 | CspR | 3.61e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DOLIIFAH_68 | 9382 | 10411 | rep38 | 1039 / 1104 | 82.68 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DOLIIFAH_1 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_2 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_3 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_4 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_5 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_6 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_7 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_8 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_10 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_11 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_12 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_13 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_14 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_15 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_17 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_19 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_21 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_22 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_24 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_25 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_28 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_29 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_30 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_33 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_34 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_35 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_36 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_37 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_39 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_42 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_44 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_45 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_46 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_47 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_48 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_49 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_50 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_51 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_52 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_53 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_54 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_55 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_56 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_57 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_58 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_59 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_60 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_61 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_62 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_63 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_64 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_65 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_66 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_67 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_68 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_69 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_70 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_71 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_72 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_74 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_75 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_76 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_77 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_78 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_79 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_80 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_81 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_82 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_83 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_84 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_85 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_86 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_87 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_88 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_89 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_91 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_92 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_93 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_94 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_96 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_97 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_98 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_99 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_100 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_101 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_102 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_103 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_104 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_105 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_107 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_109 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_110 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_111 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_112 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_113 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_114 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_115 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_116 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_117 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_118 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_120 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_121 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_122 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_124 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_125 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_126 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_127 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_128 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_131 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_132 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_133 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_134 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_135 | 0.0 | 1.0 | 0.0 |
| DOLIIFAH_136 | 1.0 | 0.0 | 1.0 |
| DOLIIFAH_138 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DOLIIFAH_72 | 4493 | 16176 | False | Siphoviridae | VOG6495, VOG3622, VOG0181, VOG10867, VOG4967, VOG3642, VOG0321, VOG10904, VOG0322, VOG6394, VOG4548, VOG3777, VOG6545, VOG4606, VOG0327, VOG9759, VOG0634, VOG3643 |
Phigaro v2.4.0 (Database: Jan. 2024 release)