Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 5 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HCIEDONB_1 | 2071058 | 2072258 | mef(A) | Erythromycin, Azithromycin | 94.75 | 98.60 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HCIEDONB_1 | 2071055 | 2072257 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.75 | 98.28 | WP_012102963.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HCIEDONB_1 | 2981757 | 2982908 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| HCIEDONB_1 | 2929993 | 2930862 | pdxS | 3.44e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HCIEDONB_1 | 628802 | 629578 | CodY | 7.78e-127 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| HCIEDONB_1 | 628802 | 629578 | codY | 2.52e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| HCIEDONB_1 | 230835 | 230266 | ClpP | 1.54e-102 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| HCIEDONB_1 | 2817875 | 2817189 | WalR | 4.54e-102 | transcriptional regulatory protein | 80.79 | 97.44 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HCIEDONB_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HCIEDONB_1 | 3039684 | 3078041 | False | Siphoviridae | VOG9576, VOG2602, VOG4602, VOG9667, VOG9667, VOG4552, VOG8241, VOG3549, VOG1878, VOG4600, VOG1309, VOG4799, VOG0189, VOG9996, VOG0397, VOG0536, VOG6440, VOG0195, VOG8445, VOG0198, VOG4571, VOG1328, VOG4995, VOG10227, VOG0691, VOG0692, VOG1183, VOG9317, VOG4572, VOG5007, VOG0695, VOG0696, VOG0697, VOG0698, VOG10044, VOG0701, VOG8263, VOG4605, VOG4599, VOG4763, VOG4052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)