Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBGGMLCF_28 | 45412 | 48975 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.91 | 100.08 | NC_008618.1 |
| PBGGMLCF_39 | 11654 | 13573 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PBGGMLCF_39 | 11654 | 13573 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PBGGMLCF_39 | 11657 | 13573 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PBGGMLCF_3 | 1.0 | 0.0 | 1.0 |
| PBGGMLCF_5 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_6 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_7 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_9 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_10 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_11 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_12 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_14 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_15 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_16 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_17 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_18 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_19 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_20 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_21 | 1.0 | 0.0 | 1.0 |
| PBGGMLCF_22 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_23 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_24 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_25 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_26 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_27 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_28 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_29 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_30 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_31 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_32 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_33 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_34 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_35 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_36 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_37 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_38 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_39 | 1.0 | 0.0 | 1.0 |
| PBGGMLCF_40 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_41 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_42 | 1.0 | 0.0 | 1.0 |
| PBGGMLCF_43 | 0.0 | 1.0 | 0.0 |
| PBGGMLCF_44 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PBGGMLCF_27 | 34769 | 48690 | False | Siphoviridae | VOG4841, VOG6459, VOG1574, VOG5101, VOG0720, VOG2806, VOG4555, VOG3434, VOG1887, VOG1581, VOG4557 |
| PBGGMLCF_33 | 76348 | 95661 | False | Siphoviridae | VOG4598, VOG3416, VOG9722, VOG3653, VOG6163, VOG5601, VOG1210, VOG4572, VOG4555, VOG2894, VOG0720 |
| PBGGMLCF_37 | 131745 | 141028 | False | Siphoviridae | VOG4544, VOG4556, VOG4568, VOG4553, VOG0880, VOG1210, VOG1159, VOG4621 |
Phigaro v2.4.0 (Database: Jan. 2024 release)