Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 4 | 4.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BEHKGBGA_1 | 2696932 | 2698308 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.00 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEHKGBGA_1 | 2696932 | 2698302 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BEHKGBGA_1 | 1813926 | 1815107 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BEHKGBGA_1 | 1197400 | 1196264 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| BEHKGBGA_1 | 1312188 | 1311319 | pdxS | 2.16e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| BEHKGBGA_1 | 3622814 | 3622038 | CodY | 4.72e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| BEHKGBGA_1 | 2171660 | 2172532 | lipA (SAUSA300_0829) | 1.28e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEHKGBGA_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEHKGBGA_1 | 6039 | 11702 | False | Siphoviridae | VOG5753, VOG7255, VOG1563, VOG11003, VOG2786 |
| BEHKGBGA_1 | 107665 | 134013 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189 |
| BEHKGBGA_1 | 3907117 | 3939380 | False | Siphoviridae | VOG6942, VOG0275, VOG5216, VOG5353, VOG5307, VOG6116, VOG8622, VOG0602, VOG4574, VOG5221, VOG4705, VOG3390, VOG4612, VOG4660, VOG4619, VOG0801, VOG6163, VOG5068, VOG11074, VOG0696, VOG5361, VOG3676, VOG4555, VOG0692, VOG2613, VOG3699, VOG5023, VOG0275, VOG1183, VOG6495, VOG7910 |
| BEHKGBGA_1 | 3940809 | 3949356 | False | Myoviridae | VOG0052, VOG3801, VOG4567, VOG0020, VOG6491, VOG4334, VOG9875, VOG6244, VOG4724 |
| BEHKGBGA_1 | 3956564 | 3967304 | False | Siphoviridae | VOG5543, VOG0982, VOG0026, VOG6497, VOG10937, VOG5753, VOG7255, VOG1563, VOG11003 |
| BEHKGBGA_1 | 3974266 | 3988926 | False | Siphoviridae | VOG0586, VOG3375, VOG6942, VOG0275, VOG5216, VOG5353, VOG5307, VOG6116, VOG8622, VOG0602, VOG4574, VOG5221, VOG4705, VOG3390, VOG4612, VOG4660, VOG4660, VOG4619, VOG4619 |
Phigaro v2.4.0 (Database: Jan. 2024 release)