Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OHDDCKLI_7 | 133694 | 132990 | WalR | 1.40e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| OHDDCKLI_39 | 13862 | 14059 | CspR | 6.46e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OHDDCKLI_1 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_2 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_3 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_4 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_6 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_7 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_8 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_9 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_10 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_11 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_12 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_13 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_14 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_15 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_16 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_17 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_18 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_19 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_20 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_21 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_22 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_23 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_24 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_25 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_26 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_27 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_28 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_29 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_31 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_32 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_33 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_34 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_35 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_36 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_37 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_38 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_39 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_41 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_42 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_43 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_44 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_45 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_46 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_47 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_48 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_49 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_50 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_51 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_52 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_53 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_54 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_55 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_56 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_57 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_58 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_59 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_62 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_63 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_64 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_65 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_66 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_67 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_68 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_69 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_70 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_71 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_72 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_73 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_74 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_75 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_76 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_77 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_78 | 0.0 | 1.0 | 0.0 |
| OHDDCKLI_79 | 1.0 | 0.0 | 1.0 |
| OHDDCKLI_80 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OHDDCKLI_22 | 54533 | 63979 | False | Siphoviridae | VOG10397, VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| OHDDCKLI_27 | 1 | 24869 | False | Siphoviridae | VOG5088, VOG4570, VOG4549, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG9955, VOG6540, VOG0703, VOG4918, VOG4605 |
| OHDDCKLI_33 | 11471 | 37218 | False | Siphoviridae | VOG2820, VOG3643, VOG3643, VOG3643, VOG0044, VOG1563, VOG0198, VOG4570, VOG4549, VOG3699, VOG10227, VOG0720, VOG4564, VOG5616, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856, VOG0861, VOG7017 |
| OHDDCKLI_39 | 34877 | 38157 | False | Unknown | VOG1309, VOG0186, VOG4566 |
Phigaro v2.4.0 (Database: Jan. 2024 release)