Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HLADNGJO_4 | 20593 | 21623 | rep38 | 1037 / 1104 | 83.90 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLADNGJO_1 | 0.0 | 1.0 | 0.0 |
| HLADNGJO_2 | 1.0 | 0.0 | 1.0 |
| HLADNGJO_3 | 1.0 | 0.0 | 1.0 |
| HLADNGJO_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HLADNGJO_1 | 195461 | 229212 | False | Siphoviridae | VOG3477, VOG0641, VOG0648, VOG4599, VOG0727, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1319, VOG10914, VOG1300, VOG4564, VOG0720, VOG10227, VOG0796, VOG4618, VOG1315, VOG0198, VOG4657, VOG0536, VOG8685, VOG0189, VOG8647, VOG0226, VOG0186, VOG1309, VOG0650, VOG3622, VOG9667, VOG0862, VOG0819 |
| HLADNGJO_1 | 345592 | 376874 | False | Siphoviridae | VOG10223, VOG4856, VOG9997, VOG10972, VOG4619, VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG10227, VOG10321, VOG0796, VOG10852, VOG0689, VOG0198, VOG1298, VOG3307, VOG0638, VOG4693, VOG10631, VOG8685, VOG0189, VOG4566, VOG0226, VOG0186, VOG1309 |
| HLADNGJO_1 | 455562 | 487162 | False | Siphoviridae | VOG1637, VOG7896, VOG4334, VOG4856, VOG6382, VOG5361, VOG10972, VOG4619, VOG0801, VOG6163, VOG0701, VOG10044, VOG0698, VOG0697, VOG0696, VOG0695, VOG4711, VOG4555, VOG0692, VOG0691, VOG4544, VOG3699, VOG0198, VOG4566, VOG0226, VOG0186, VOG1309, VOG2228, VOG4552, VOG9667 |
| HLADNGJO_1 | 988537 | 1004071 | False | Myoviridae | VOG8295, VOG0025, VOG6085, VOG0226, VOG0205, VOG0384, VOG0382, VOG0083, VOG5235 |
| HLADNGJO_1 | 1454887 | 1481840 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG6154, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438, VOG0052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)