Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBOPIGAN_19 | 57859 | 59487 | tet(O) | ARO:3000190 | tet(O) | 98.87 | 84.82 | M18896.2 |
| NBOPIGAN_21 | 44752 | 48315 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NBOPIGAN_19 | 57567 | 59487 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NBOPIGAN_19 | 57895 | 59487 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 99.62 | 83.10 | WP_050824634.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NBOPIGAN_1 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_2 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_3 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_4 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_5 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_6 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_7 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_8 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_9 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_10 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_11 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_12 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_13 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_16 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_17 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_18 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_19 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_20 | 1.0 | 0.0 | 1.0 |
| NBOPIGAN_21 | 0.0 | 1.0 | 0.0 |
| NBOPIGAN_22 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)