Probiotic potential risk score


ARGs VFs PGs PPRS
4004.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
ABCPDPEA_36161758165321Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicinARO:3004480Bado_rpoB_RIF92.48100.08NC_008618.1
ABCPDPEA_2448505704ErmXARO:3000596ErmX86.97100.00M36726.1
ABCPDPEA_2417102564ErmXARO:3000596ErmX88.03100.00M36726.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
ABCPDPEA_2417102472erm(X)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S97.51100.00X51472

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
ABCPDPEA_2417102561erm(X)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X)BLASTX97.18100.00WP_011117480.1
ABCPDPEA_2448505701erm(X)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X)BLASTX96.13100.00WP_011152925.1
ABCPDPEA_1918642556erm(X)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X)PARTIAL_CONTIG_ENDX96.1081.34WP_011152925.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
No hit found

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
ABCPDPEA_10.01.00.0
ABCPDPEA_20.01.00.0
ABCPDPEA_30.01.00.0
ABCPDPEA_40.01.00.0
ABCPDPEA_50.01.00.0
ABCPDPEA_61.00.01.0
ABCPDPEA_70.01.00.0
ABCPDPEA_80.01.00.0
ABCPDPEA_90.01.00.0
ABCPDPEA_100.01.00.0
ABCPDPEA_110.01.00.0
ABCPDPEA_120.01.00.0
ABCPDPEA_130.01.00.0
ABCPDPEA_140.01.00.0
ABCPDPEA_151.00.01.0
ABCPDPEA_160.01.00.0
ABCPDPEA_170.01.00.0
ABCPDPEA_190.01.00.0
ABCPDPEA_200.01.00.0
ABCPDPEA_211.00.01.0
ABCPDPEA_221.00.01.0
ABCPDPEA_230.01.00.0
ABCPDPEA_240.01.00.0
ABCPDPEA_250.01.00.0
ABCPDPEA_270.01.00.0
ABCPDPEA_281.00.01.0
ABCPDPEA_290.01.00.0
ABCPDPEA_301.00.01.0
ABCPDPEA_310.01.00.0
ABCPDPEA_321.00.01.0
ABCPDPEA_330.01.00.0
ABCPDPEA_340.01.00.0
ABCPDPEA_351.00.01.0
ABCPDPEA_360.01.00.0
ABCPDPEA_371.00.01.0
ABCPDPEA_380.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
ABCPDPEA_11174120841FalseSiphoviridaeVOG10957, VOG3416, VOG9722, VOG4633, VOG5793, VOG5601, VOG1791, VOG1210, VOG4572, VOG4555, VOG2894, VOG0720, VOG5101
ABCPDPEA_34192834213900FalseSiphoviridaeVOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG4621, VOG4557, VOG4582, VOG5793, VOG4569, VOG4599, VOG0933

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements