Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LODAJPPA_39 | 11494 | 13419 | tet(M) | ARO:3000186 | tet(M) | 99.06 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LODAJPPA_39 | 11494 | 13419 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | X75073 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LODAJPPA_39 | 11497 | 13419 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.69 | 100.00 | WP_000691727.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LODAJPPA_12 | 36749 | 37456 | WalR | 1.45e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LODAJPPA_18 | 95597 | 95400 | CspR | 4.52e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LODAJPPA_18 | 95597 | 95403 | CspA | 2.20e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LODAJPPA_39 | 21693 | 22898 | repUS43 | 1206 / 1206 | 100.00 | CP003584 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LODAJPPA_1 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_2 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_3 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_4 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_6 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_7 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_8 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_9 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_10 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_11 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_12 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_13 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_14 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_15 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_16 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_17 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_18 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_19 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_21 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_22 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_23 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_27 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_28 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_29 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_34 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_38 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_39 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_45 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_46 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_56 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_58 | 1.0 | 0.0 | 1.0 |
| LODAJPPA_67 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_77 | 0.0 | 1.0 | 0.0 |
| LODAJPPA_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LODAJPPA_6 | 82299 | 91064 | False | Siphoviridae | VOG3947, VOG9454, VOG0535, VOG0322, VOG6545, VOG0514, VOG11003, VOG4799, VOG0025, VOG0586, VOG0536, VOG10643 |
| LODAJPPA_6 | 93217 | 113540 | False | Siphoviridae | VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG6163, VOG4633, VOG5904, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)