Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MFJOGEMB_12 | 13391 | 14098 | WalR | 1.04e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MFJOGEMB_21 | 96834 | 96637 | CspR | 2.47e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MFJOGEMB_21 | 96834 | 96640 | CspA | 1.21e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MFJOGEMB_1 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_2 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_3 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_4 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_5 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_6 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_7 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_9 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_10 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_11 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_12 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_13 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_14 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_15 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_16 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_17 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_18 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_19 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_20 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_21 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_22 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_23 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_24 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_25 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_26 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_27 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_28 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_30 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_31 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_32 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_33 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_34 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_35 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_36 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_37 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_41 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_42 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_45 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_48 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_49 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_56 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_57 | 1.0 | 0.0 | 1.0 |
| MFJOGEMB_58 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_59 | 0.0 | 1.0 | 0.0 |
| MFJOGEMB_60 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MFJOGEMB_6 | 9601 | 36692 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG4440, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG4545, VOG0801, VOG3462 |
| MFJOGEMB_6 | 58001 | 68193 | False | Siphoviridae | VOG10859, VOG8987, VOG11003, VOG4552, VOG6128, VOG1309, VOG0186, VOG9438, VOG4566, VOG0189, VOG9667, VOG5280, VOG5317, VOG0586, VOG0536, VOG0536, VOG10643 |
| MFJOGEMB_6 | 70518 | 92291 | False | Siphoviridae | VOG0198, VOG4618, VOG7442, VOG8462, VOG1517, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)