Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPODCCMO_12 | 30210 | 30917 | WalR | 1.98e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| OPODCCMO_11 | 37646 | 37449 | CspR | 8.21e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| OPODCCMO_11 | 37646 | 37452 | CspA | 4.01e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OPODCCMO_1 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_2 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_3 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_4 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_5 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_6 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_7 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_8 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_9 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_10 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_11 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_12 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_13 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_14 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_15 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_16 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_17 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_19 | 1.0 | 0.0 | 1.0 |
| OPODCCMO_23 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_24 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_34 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_42 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_43 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_44 | 0.0 | 1.0 | 0.0 |
| OPODCCMO_46 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OPODCCMO_3 | 199488 | 221987 | False | Siphoviridae | VOG4693, VOG10643, VOG0637, VOG6089, VOG7235, VOG0198, VOG3699, VOG4544, VOG0720, VOG4564, VOG3749, VOG4555, VOG1329, VOG4713, VOG0704, VOG0799, VOG0725, VOG0817, VOG6163, VOG0801, VOG3462, VOG10488 |
| OPODCCMO_19 | 41225 | 79731 | False | Siphoviridae | VOG5539, VOG4628, VOG3920, VOG8294, VOG0703, VOG1637, VOG4705, VOG4334, VOG6540, VOG10868, VOG4856, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG4555, VOG5847, VOG0692, VOG0691, VOG4544, VOG3699, VOG8681, VOG0198, VOG0637, VOG7265, VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG4995, VOG1563, VOG11003, VOG8520 |
Phigaro v2.4.0 (Database: Jan. 2024 release)