Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDFFJPEE_1 | 51343 | 52050 | WalR | 2.19e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| MDFFJPEE_5 | 96840 | 96643 | CspR | 2.87e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| MDFFJPEE_5 | 96840 | 96646 | CspA | 1.40e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDFFJPEE_1 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_2 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_3 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_4 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_5 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_6 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_7 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_8 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_9 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_10 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_11 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_12 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_13 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_14 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_15 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_16 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_17 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_18 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_19 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_20 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_21 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_22 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_23 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_24 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_25 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_27 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_28 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_31 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_33 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_34 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_39 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_44 | 1.0 | 0.0 | 1.0 |
| MDFFJPEE_45 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_46 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_47 | 0.0 | 1.0 | 0.0 |
| MDFFJPEE_48 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDFFJPEE_7 | 41685 | 46366 | False | Unknown | VOG11003, VOG4552, VOG3379, VOG8056, VOG8353, VOG9763, VOG7006 |
| MDFFJPEE_44 | 5740 | 32441 | False | Siphoviridae | VOG4602, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG0198, VOG4440, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0539, VOG0207, VOG4586, VOG4545, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)