Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LKPMBICO_1 | 50553 | 51260 | WalR | 2.82e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LKPMBICO_7 | 96845 | 96648 | CspR | 3.32e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LKPMBICO_7 | 96845 | 96651 | CspA | 1.62e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LKPMBICO_1 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_2 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_3 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_4 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_5 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_6 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_7 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_8 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_9 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_10 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_11 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_12 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_13 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_14 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_15 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_16 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_17 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_18 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_19 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_23 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_27 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_29 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_31 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_34 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_37 | 1.0 | 0.0 | 1.0 |
| LKPMBICO_45 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_48 | 0.0 | 1.0 | 0.0 |
| LKPMBICO_50 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LKPMBICO_45 | 217213 | 242029 | False | Siphoviridae | VOG10560, VOG7235, VOG0198, VOG6422, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0660, VOG0083, VOG9274, VOG0801, VOG3462, VOG7521, VOG4856, VOG8134, VOG6540 |
Phigaro v2.4.0 (Database: Jan. 2024 release)