Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DGDGGOJB_12 | 13391 | 14098 | WalR | 1.04e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DGDGGOJB_18 | 96835 | 96638 | CspR | 2.47e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DGDGGOJB_18 | 96835 | 96641 | CspA | 1.21e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| DGDGGOJB_22 | 3137 | 3684 | rep38 | 553 / 903 | 83.73 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DGDGGOJB_1 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_2 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_3 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_5 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_6 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_7 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_8 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_9 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_10 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_11 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_12 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_13 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_14 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_15 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_16 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_17 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_18 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_19 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_20 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_21 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_22 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_23 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_25 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_26 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_27 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_28 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_29 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_30 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_31 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_34 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_36 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_39 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_41 | 1.0 | 0.0 | 1.0 |
| DGDGGOJB_45 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_47 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_48 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_49 | 0.0 | 1.0 | 0.0 |
| DGDGGOJB_50 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DGDGGOJB_13 | 239820 | 251472 | False | Siphoviridae | VOG4619, VOG0801, VOG5793, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG0198 |
| DGDGGOJB_13 | 252979 | 264856 | False | Siphoviridae | VOG4693, VOG7264, VOG4548, VOG5317, VOG5280, VOG7263, VOG0322, VOG0083, VOG10043, VOG0650, VOG4552, VOG11077, VOG1300, VOG7742 |
| DGDGGOJB_50 | 5780 | 17058 | False | Siphoviridae | VOG8520, VOG1563, VOG4552, VOG2228, VOG10109, VOG4548, VOG1024, VOG5014, VOG0327, VOG0322, VOG2631, VOG4577 |
| DGDGGOJB_50 | 18095 | 40815 | True | Siphoviridae | VOG5998, VOG5562, VOG0275, VOG5278, VOG0195, VOG1026, VOG7894, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG8263, VOG0801, VOG3462 |
Phigaro v2.4.0 (Database: Jan. 2024 release)