Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEFHLAGG_16 | 51305 | 52012 | WalR | 2.85e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| LEFHLAGG_20 | 96372 | 96175 | CspR | 2.04e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| LEFHLAGG_20 | 96372 | 96178 | CspA | 9.95e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEFHLAGG_1 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_2 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_7 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_8 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_9 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_10 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_11 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_13 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_14 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_15 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_16 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_17 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_18 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_19 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_20 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_21 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_22 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_23 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_24 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_25 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_26 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_27 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_28 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_29 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_33 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_34 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_35 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_36 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_38 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_39 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_40 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_42 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_44 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_45 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_47 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_50 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_53 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_54 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_55 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_59 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_60 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_62 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_64 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_71 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_82 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_83 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_93 | 0.0 | 1.0 | 0.0 |
| LEFHLAGG_96 | 1.0 | 0.0 | 1.0 |
| LEFHLAGG_100 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEFHLAGG_71 | 6099 | 17212 | False | Siphoviridae | VOG9667, VOG7742, VOG1300, VOG11077, VOG4552, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548 |
| LEFHLAGG_71 | 19343 | 40276 | False | Siphoviridae | VOG0198, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG0801, VOG4619, VOG8438, VOG4334 |
Phigaro v2.4.0 (Database: Jan. 2024 release)