Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_55 | 6112 | 6759 | catA8 | ARO:3004658 | catA8 | 98.60 | 100.00 | JQ922409.1 |
| BHLIKPEM_41 | 1711 | 3087 | tet(L) | ARO:3000179 | tet(L) | 99.78 | 100.00 | M11036.1 |
| BHLIKPEM_55 | 264 | 2189 | tet(M) | ARO:3000186 | tet(M) | 98.44 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BHLIKPEM_41 | 1711 | 3087 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | M29725 |
| BHLIKPEM_55 | 264 | 2189 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.58 | 100.00 | AM990992 |
| BHLIKPEM_55 | 6112 | 6759 | cat | Chloramphenicol | 99.54 | 100.00 | U35036 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_41 | 1714 | 3087 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_001574277.1 |
| BHLIKPEM_55 | 267 | 2189 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.53 | 100.00 | WP_000691736.1 |
| BHLIKPEM_55 | 6115 | 6759 | catA | type A-8 chloramphenicol O-acetyltransferase | BLASTX | 99.07 | 100.00 | WP_002352254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHLIKPEM_12 | 35000 | 35707 | WalR | 2.08e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| BHLIKPEM_24 | 71104 | 70907 | CspR | 1.04e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| BHLIKPEM_24 | 71104 | 70910 | CspA | 1.79e-27 | cold shock protein | 80.00 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BHLIKPEM_1 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_2 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_3 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_4 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_5 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_6 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_9 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_10 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_11 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_12 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_13 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_14 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_15 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_16 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_17 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_18 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_19 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_20 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_21 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_22 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_23 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_24 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_25 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_26 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_27 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_28 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_29 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_30 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_31 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_32 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_33 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_34 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_36 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_38 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_39 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_40 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_41 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_42 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_43 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_45 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_46 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_49 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_50 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_54 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_55 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_56 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_59 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_64 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_69 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_72 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_76 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_78 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_80 | 1.0 | 0.0 | 1.0 |
| BHLIKPEM_81 | 0.0 | 1.0 | 0.0 |
| BHLIKPEM_87 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BHLIKPEM_11 | 74672 | 112770 | False | Myoviridae | VOG6495, VOG9667, VOG4552, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5998, VOG5562, VOG0275, VOG8279, VOG0195, VOG0198, VOG8681, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG9813, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG5008, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)