Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
DKKJOOJC_15138652093WalR2.20e-116transcriptional regulatory protein85.59100.43EPH95667
DKKJOOJC_3059795782CspR6.92e-29cold shock protein81.82100.00AAO82613
DKKJOOJC_3059795785CspA3.38e-28cold shock protein81.5498.48CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
DKKJOOJC_376421669rep381033 / 110484.61CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
DKKJOOJC_10.01.00.0
DKKJOOJC_21.00.01.0
DKKJOOJC_30.01.00.0
DKKJOOJC_40.01.00.0
DKKJOOJC_70.01.00.0
DKKJOOJC_80.01.00.0
DKKJOOJC_90.01.00.0
DKKJOOJC_100.01.00.0
DKKJOOJC_111.00.01.0
DKKJOOJC_120.01.00.0
DKKJOOJC_140.01.00.0
DKKJOOJC_150.01.00.0
DKKJOOJC_170.01.00.0
DKKJOOJC_180.01.00.0
DKKJOOJC_190.01.00.0
DKKJOOJC_200.01.00.0
DKKJOOJC_220.01.00.0
DKKJOOJC_230.01.00.0
DKKJOOJC_241.00.01.0
DKKJOOJC_250.01.00.0
DKKJOOJC_260.01.00.0
DKKJOOJC_271.00.01.0
DKKJOOJC_280.01.00.0
DKKJOOJC_300.01.00.0
DKKJOOJC_310.01.00.0
DKKJOOJC_320.01.00.0
DKKJOOJC_331.00.01.0
DKKJOOJC_340.01.00.0
DKKJOOJC_350.01.00.0
DKKJOOJC_360.01.00.0
DKKJOOJC_371.00.01.0
DKKJOOJC_381.00.01.0
DKKJOOJC_391.00.01.0
DKKJOOJC_411.00.01.0
DKKJOOJC_421.00.01.0
DKKJOOJC_431.00.01.0
DKKJOOJC_450.01.00.0
DKKJOOJC_461.00.01.0
DKKJOOJC_471.00.01.0
DKKJOOJC_481.00.01.0
DKKJOOJC_491.00.01.0
DKKJOOJC_501.00.01.0
DKKJOOJC_511.00.01.0
DKKJOOJC_521.00.01.0
DKKJOOJC_541.00.01.0
DKKJOOJC_551.00.01.0
DKKJOOJC_560.01.00.0
DKKJOOJC_571.00.01.0
DKKJOOJC_581.00.01.0
DKKJOOJC_591.00.01.0
DKKJOOJC_601.00.01.0
DKKJOOJC_611.00.01.0
DKKJOOJC_731.00.01.0
DKKJOOJC_780.01.00.0
DKKJOOJC_890.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
DKKJOOJC_11515917101FalseMyoviridaeVOG2228, VOG10109, VOG4548, VOG1024, VOG5014, VOG0327, VOG0322, VOG6545, VOG4577, VOG4999, VOG4606, VOG5998, VOG5562
DKKJOOJC_112229538319FalseSiphoviridaeVOG7894, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG4545, VOG0801
DKKJOOJC_18593411150FalseSiphoviridaeVOG0275, VOG4602, VOG8520, VOG8520, VOG6495, VOG0831, VOG8353
DKKJOOJC_362737533200FalseSiphoviridaeVOG4552, VOG3379, VOG8056, VOG8353, VOG8625, VOG7006, VOG4632, VOG4606, VOG4606
DKKJOOJC_455532164093FalseSiphoviridaeVOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements