Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CFHHBMID_100 | 36583 | 37290 | WalR | 2.09e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| CFHHBMID_149 | 279 | 82 | CspR | 3.34e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| CFHHBMID_149 | 279 | 85 | CspA | 1.63e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFHHBMID_1 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_2 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_3 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_4 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_5 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_11 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_12 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_13 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_14 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_16 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_24 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_28 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_33 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_35 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_46 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_48 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_55 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_57 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_68 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_78 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_79 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_81 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_90 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_95 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_97 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_98 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_99 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_100 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_101 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_102 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_103 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_104 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_105 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_106 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_107 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_108 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_109 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_110 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_111 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_112 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_113 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_114 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_115 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_116 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_117 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_118 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_119 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_120 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_121 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_122 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_123 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_124 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_126 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_127 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_128 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_129 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_130 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_131 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_132 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_133 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_134 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_135 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_136 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_137 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_139 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_141 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_142 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_143 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_144 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_145 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_146 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_147 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_148 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_149 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_150 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_151 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_152 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_153 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_154 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_155 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_156 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_157 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_158 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_159 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_160 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_161 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_162 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_163 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_164 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_166 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_168 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_169 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_170 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_171 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_174 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_175 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_177 | 0.0 | 1.0 | 0.0 |
| CFHHBMID_182 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_184 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_185 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_186 | 1.0 | 0.0 | 1.0 |
| CFHHBMID_187 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFHHBMID_14 | 4507 | 22206 | False | Siphoviridae | VOG4618, VOG4618, VOG1517, VOG0720, VOG4564, VOG0638, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633 |
| CFHHBMID_120 | 11397 | 15991 | False | Siphoviridae | VOG0695, VOG4606, VOG4999, VOG4632, VOG7006, VOG5050, VOG8353 |
| CFHHBMID_123 | 42476 | 65685 | False | Siphoviridae | VOG0641, VOG5008, VOG4828, VOG4633, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG4841, VOG0638, VOG2545, VOG0376 |
| CFHHBMID_124 | 19116 | 38385 | False | Siphoviridae | VOG0760, VOG4602, VOG8520, VOG11003, VOG1563, VOG4995, VOG0083, VOG0322, VOG7263, VOG5280, VOG5317, VOG4548, VOG7264, VOG4693, VOG7265, VOG0637, VOG0198, VOG1315, VOG0796, VOG10227, VOG0720, VOG0720 |
| CFHHBMID_146 | 35297 | 71773 | True | Siphoviridae | VOG1676, VOG8653, VOG11003, VOG4548, VOG0198, VOG7438, VOG1047, VOG0021, VOG0026, VOG4552, VOG4606, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG9409, VOG0221, VOG0221, VOG0221, VOG0539 |
Phigaro v2.4.0 (Database: Jan. 2024 release)