Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMILKFDD_25 | 26392 | 27099 | WalR | 1.39e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| IMILKFDD_52 | 68650 | 68453 | CspR | 1.77e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| IMILKFDD_52 | 68650 | 68456 | CspA | 8.63e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IMILKFDD_66 | 27861 | 28891 | rep38 | 1038 / 1104 | 80.25 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMILKFDD_1 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_2 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_5 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_6 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_7 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_8 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_10 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_11 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_13 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_14 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_15 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_16 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_17 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_18 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_19 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_20 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_21 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_22 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_23 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_24 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_25 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_26 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_27 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_28 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_29 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_30 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_32 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_33 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_34 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_35 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_36 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_37 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_38 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_39 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_40 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_41 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_42 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_43 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_44 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_45 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_46 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_47 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_48 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_49 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_50 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_51 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_52 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_53 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_55 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_56 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_57 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_58 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_59 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_60 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_61 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_62 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_65 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_66 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_67 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_68 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_69 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_70 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_71 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_72 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_76 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_80 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_82 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_83 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_84 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_90 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_91 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_95 | 0.0 | 1.0 | 0.0 |
| IMILKFDD_98 | 1.0 | 0.0 | 1.0 |
| IMILKFDD_101 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMILKFDD_10 | 3672 | 18026 | False | Siphoviridae | VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629, VOG9258 |
| IMILKFDD_71 | 4836 | 14128 | False | Siphoviridae | VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698 |
Phigaro v2.4.0 (Database: Jan. 2024 release)