Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JDOENKDP_58 | 26339 | 27046 | WalR | 1.38e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| JDOENKDP_86 | 76555 | 76358 | CspR | 1.89e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JDOENKDP_86 | 76555 | 76361 | CspA | 9.20e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JDOENKDP_1 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_2 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_10 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_13 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_17 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_24 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_35 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_41 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_42 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_44 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_45 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_46 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_47 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_48 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_49 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_50 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_51 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_52 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_53 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_54 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_55 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_56 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_57 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_58 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_59 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_60 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_61 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_62 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_63 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_64 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_65 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_68 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_69 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_70 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_71 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_72 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_73 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_74 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_75 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_76 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_77 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_78 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_79 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_80 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_81 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_82 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_83 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_84 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_85 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_86 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_87 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_88 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_89 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_90 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_91 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_92 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_93 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_94 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_95 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_96 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_99 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_100 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_102 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_103 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_104 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_106 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_107 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_109 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_111 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_112 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_113 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_114 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_115 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_116 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_117 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_118 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_124 | 0.0 | 1.0 | 0.0 |
| JDOENKDP_125 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_126 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_127 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_128 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_131 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_133 | 1.0 | 0.0 | 1.0 |
| JDOENKDP_134 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JDOENKDP_44 | 3672 | 18026 | False | Siphoviridae | VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629, VOG9258 |
| JDOENKDP_62 | 8134 | 18952 | False | Siphoviridae | VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698 |
Phigaro v2.4.0 (Database: Jan. 2024 release)