Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCHAHMGI_1 | 63447 | 64154 | WalR | 3.11e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FCHAHMGI_4 | 96791 | 96594 | CspR | 4.39e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FCHAHMGI_4 | 96791 | 96597 | CspA | 2.14e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCHAHMGI_1 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_2 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_3 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_4 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_5 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_6 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_7 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_8 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_9 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_10 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_11 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_12 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_13 | 1.0 | 0.0 | 1.0 |
| FCHAHMGI_23 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_31 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_32 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_33 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_34 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_35 | 0.0 | 1.0 | 0.0 |
| FCHAHMGI_36 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCHAHMGI_35 | 76663 | 113599 | False | Myoviridae | VOG4552, VOG3691, VOG11003, VOG6357, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG9107, VOG0198, VOG3477, VOG8681, VOG0796, VOG10227, VOG0720, VOG4564, VOG9789, VOG4555, VOG4711, VOG3435, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG9813, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4763, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)