Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FBKIFAMG_1 | 64470 | 63769 | WalR | 1.23e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FBKIFAMG_3 | 5159 | 6094 | rep28 | 936 / 936 | 99.36 | CP005948 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FBKIFAMG_1 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_2 | 1.0 | 0.0 | 1.0 |
| FBKIFAMG_3 | 1.0 | 0.0 | 1.0 |
| FBKIFAMG_9 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_12 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_13 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_14 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_15 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_16 | 1.0 | 0.0 | 1.0 |
| FBKIFAMG_18 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_19 | 1.0 | 0.0 | 1.0 |
| FBKIFAMG_20 | 0.0 | 1.0 | 0.0 |
| FBKIFAMG_21 | 1.0 | 0.0 | 1.0 |
| FBKIFAMG_22 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FBKIFAMG_13 | 5276 | 32753 | False | Myoviridae | VOG3298, VOG3298, VOG6344, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4910, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG2621, VOG1887, VOG3434, VOG5859, VOG4564, VOG0720, VOG7407, VOG0052, VOG0045 |
| FBKIFAMG_13 | 253594 | 286765 | False | Siphoviridae | VOG9955, VOG10972, VOG4599, VOG4605, VOG5904, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4581, VOG4841, VOG5279, VOG0198, VOG0149, VOG1183, VOG4732, VOG6970, VOG3643, VOG3307, VOG0044, VOG3480, VOG0052, VOG1246, VOG4566, VOG0514, VOG0226, VOG0283, VOG0535, VOG11003 |
| FBKIFAMG_16 | 3406 | 25028 | False | Myoviridae | VOG0720, VOG4564, VOG4555, VOG1329, VOG1353, VOG1883, VOG1352, VOG4699, VOG4545, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG6382, VOG0703 |
| FBKIFAMG_16 | 35695 | 41141 | False | Myoviridae / Siphoviridae | VOG0321, VOG0283, VOG0226, VOG0514, VOG4566, VOG0052, VOG9326, VOG0044, VOG5393 |
Phigaro v2.4.0 (Database: Jan. 2024 release)