Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIEPIABF_1 | 36743 | 37444 | WalR | 3.72e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FIEPIABF_7 | 8008 | 8943 | rep28 | 937 / 936 | 81.86 | CP005948 |
| FIEPIABF_5 | 33215 | 34251 | rep38 | 1048 / 1104 | 80.73 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIEPIABF_1 | 0.0 | 1.0 | 0.0 |
| FIEPIABF_2 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_3 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_4 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_5 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_6 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_7 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_8 | 1.0 | 0.0 | 1.0 |
| FIEPIABF_9 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIEPIABF_1 | 890599 | 920422 | False | Myoviridae | VOG0198, VOG10072, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG7896, VOG9601 |
| FIEPIABF_1 | 1647397 | 1679799 | False | Siphoviridae | VOG0753, VOG0703, VOG4705, VOG5318, VOG9955, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG4737, VOG0198, VOG3643, VOG0195, VOG0044, VOG4801, VOG1931, VOG0189, VOG8647, VOG0514, VOG6545, VOG0322 |
| FIEPIABF_6 | 2231 | 4688 | False | Unknown | VOG0226, VOG0283, VOG0535, VOG11003, VOG5052, VOG6209 |
| FIEPIABF_6 | 15516 | 39310 | False | Myoviridae | VOG0703, VOG10793, VOG4845, VOG4691, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG5904, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227 |
Phigaro v2.4.0 (Database: Jan. 2024 release)