Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 0 | 1 | 10.05 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIPFEANN_84 | 18830 | 20206 | tet(L) | ARO:3000179 | tet(L) | 98.47 | 100.00 | M11036.1 |
| CIPFEANN_118 | 7230 | 7715 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| CIPFEANN_128 | 6632 | 7417 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 99.62 | 98.86 | CP004067.1 |
| CIPFEANN_127 | 2533 | 3285 | ErmB | ARO:3000375 | ErmB | 97.96 | 100.81 | AF242872.1 |
| CIPFEANN_2 | 2533 | 3303 | ANT(4')-Ia | ARO:3002623 | ANT(4')-Ia | 99.60 | 101.19 | K02551.1 |
| CIPFEANN_152 | 1585 | 2229 | vatE | ARO:3002844 | vatE | 100.00 | 100.00 | AF242872.1 |
| CIPFEANN_145 | 907 | 2316 | fexB | ARO:3007019 | fexB | 99.57 | 100.00 | JN201336.1 |
| CIPFEANN_5 | 547 | 2466 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CIPFEANN_134 | 4083 | 4949 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| CIPFEANN_152 | 1585 | 2229 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 100.00 | 100.00 | AJ488494 |
| CIPFEANN_2 | 2542 | 3303 | aadD | Amikacin, Tobramycin | 99.87 | 100.00 | M19465 |
| CIPFEANN_128 | 6632 | 7426 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 99.87 | 100.00 | M26832 |
| CIPFEANN_39 | 193 | 961 | ant(9)-Ia | Spectinomycin | 99.87 | 98.21 | X02588 |
| CIPFEANN_145 | 907 | 2316 | fexB | Chloramphenicol, Florfenicol | 99.86 | 100.00 | JN201336 |
| CIPFEANN_84 | 18830 | 20206 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.64 | 100.00 | AY081910 |
| CIPFEANN_127 | 2533 | 3285 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.34 | 100.00 | U48430 |
| CIPFEANN_5 | 547 | 2466 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
| CIPFEANN_118 | 7230 | 7715 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CIPFEANN_2 | 2533 | 3300 | aadD1 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ia | EXACTX | 100.00 | 100.00 | WP_032488330.1 |
| CIPFEANN_134 | 4083 | 4946 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| CIPFEANN_118 | 7230 | 7712 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| CIPFEANN_152 | 1585 | 2226 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | EXACTX | 100.00 | 100.00 | WP_002328813.1 |
| CIPFEANN_5 | 550 | 2466 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_003672618.1 |
| CIPFEANN_128 | 6635 | 7426 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | BLASTX | 99.62 | 100.00 | WP_001096887.1 |
| CIPFEANN_145 | 907 | 2313 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 99.57 | 100.00 | WP_002415211.1 |
| CIPFEANN_84 | 18830 | 20203 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_002294500.1 |
| CIPFEANN_39 | 185 | 961 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | INTERNAL_STOP | 98.84 | 99.62 | WP_000067268.1 |
| CIPFEANN_127 | 2536 | 3285 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.40 | 100.00 | WP_011018369.1 |
| CIPFEANN_128 | 7522 | 7851 | sat4 | streptothricin N-acetyltransferase Sat4 | PARTIALX | 96.49 | 63.33 | WP_000627290.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CIPFEANN_55 | 17894 | 18088 | CspA | 5.54e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CIPFEANN_142 | 2578 | 3616 | repUS67 | 1041 / 1039 | 94.81 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CIPFEANN_1 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_2 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_3 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_4 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_5 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_6 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_7 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_8 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_9 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_10 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_11 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_12 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_13 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_14 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_15 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_16 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_17 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_18 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_19 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_20 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_21 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_22 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_23 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_24 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_27 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_28 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_29 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_30 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_31 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_32 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_33 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_35 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_36 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_37 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_39 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_40 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_41 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_42 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_43 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_44 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_45 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_46 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_47 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_48 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_55 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_61 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_62 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_63 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_64 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_65 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_66 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_67 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_68 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_69 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_70 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_71 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_72 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_73 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_74 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_75 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_76 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_77 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_78 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_79 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_80 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_81 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_82 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_83 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_84 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_85 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_86 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_87 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_88 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_89 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_90 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_91 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_92 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_93 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_94 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_95 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_96 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_97 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_98 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_99 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_100 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_101 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_102 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_103 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_104 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_105 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_106 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_107 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_108 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_109 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_110 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_111 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_112 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_113 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_114 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_115 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_116 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_117 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_118 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_119 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_120 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_121 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_122 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_123 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_124 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_125 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_126 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_127 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_128 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_129 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_130 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_131 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_132 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_133 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_134 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_135 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_136 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_137 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_138 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_139 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_140 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_141 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_142 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_143 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_144 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_145 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_146 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_147 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_148 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_150 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_151 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_152 | 1.0 | 0.0 | 1.0 |
| CIPFEANN_153 | 0.0 | 1.0 | 0.0 |
| CIPFEANN_154 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CIPFEANN_88 | 5645 | 36245 | False | Siphoviridae | VOG11077, VOG1309, VOG0186, VOG8647, VOG0536, VOG3307, VOG5662, VOG1183, VOG4693, VOG4693, VOG0198, VOG0796, VOG10227, VOG0691, VOG0692, VOG2649, VOG0692, VOG5847, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG7291, VOG8438, VOG1869, VOG4705, VOG2315, VOG8917 |
| CIPFEANN_143 | 6231 | 35463 | True | Siphoviridae | VOG4548, VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG3520, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221, VOG5413 |
Phigaro v2.4.0 (Database: Jan. 2024 release)