Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 1 | 6.08 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBNEDFCG_141 | 7523 | 9295 | tet(W) | ARO:3000194 | tet(W) | 97.29 | 92.49 | AJ222769.3 |
| BBNEDFCG_160 | 4047 | 4532 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| BBNEDFCG_160 | 2568 | 3338 | ANT(4')-Ia | ARO:3002623 | ANT(4')-Ia | 99.60 | 101.19 | K02551.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BBNEDFCG_152 | 4942 | 5808 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| BBNEDFCG_160 | 2577 | 3338 | aadD | Amikacin, Tobramycin | 99.87 | 100.00 | M19465 |
| BBNEDFCG_39 | 416 | 1184 | ant(9)-Ia | Spectinomycin | 99.87 | 98.21 | X02588 |
| BBNEDFCG_133 | 327 | 1684 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.19 | 98.40 | AY081910 |
| BBNEDFCG_141 | 7523 | 9295 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.87 | 92.34 | FN396364 |
| BBNEDFCG_160 | 4047 | 4532 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BBNEDFCG_160 | 2568 | 3335 | aadD1 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ia | EXACTX | 100.00 | 100.00 | WP_032488330.1 |
| BBNEDFCG_152 | 4942 | 5805 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| BBNEDFCG_141 | 7523 | 9295 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.83 | 92.49 | WP_003672618.1 |
| BBNEDFCG_160 | 4047 | 4529 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| BBNEDFCG_133 | 347 | 1681 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.10 | 97.16 | WP_002294500.1 |
| BBNEDFCG_39 | 408 | 1184 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | INTERNAL_STOP | 98.84 | 99.62 | WP_000067268.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BBNEDFCG_158 | 6075 | 5881 | CspA | 6.94e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BBNEDFCG_19 | 1008 | 1784 | rep30 | 777 / 777 | 97.43 | CP002845 |
| BBNEDFCG_89 | 19428 | 20466 | repUS67 | 1040 / 1039 | 95.00 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BBNEDFCG_1 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_2 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_3 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_4 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_5 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_6 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_7 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_8 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_9 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_10 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_11 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_12 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_13 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_14 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_15 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_16 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_17 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_18 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_19 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_20 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_21 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_22 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_23 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_24 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_25 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_26 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_27 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_28 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_29 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_30 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_32 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_33 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_34 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_35 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_36 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_37 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_38 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_39 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_40 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_41 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_42 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_44 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_45 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_46 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_47 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_48 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_49 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_51 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_52 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_53 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_54 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_55 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_56 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_57 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_66 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_77 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_78 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_79 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_80 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_81 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_82 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_83 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_84 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_85 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_86 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_87 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_88 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_89 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_90 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_91 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_92 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_93 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_94 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_95 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_96 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_97 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_98 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_99 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_100 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_101 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_102 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_103 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_104 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_105 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_106 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_107 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_108 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_109 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_110 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_111 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_112 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_113 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_114 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_115 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_116 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_117 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_118 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_119 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_120 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_121 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_122 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_123 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_124 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_125 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_126 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_127 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_128 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_129 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_130 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_131 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_132 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_133 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_134 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_135 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_136 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_137 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_138 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_139 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_140 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_141 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_142 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_143 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_144 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_145 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_146 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_147 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_148 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_149 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_150 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_151 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_152 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_153 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_154 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_155 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_156 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_157 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_158 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_159 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_160 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_161 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_162 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_163 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_164 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_166 | 0.0 | 1.0 | 0.0 |
| BBNEDFCG_167 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_168 | 1.0 | 0.0 | 1.0 |
| BBNEDFCG_169 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BBNEDFCG_103 | 22064 | 51024 | False | Siphoviridae | VOG0817, VOG0519, VOG4606, VOG0198, VOG4570, VOG10660, VOG1345, VOG4693, VOG8220, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG0801, VOG10972, VOG4856, VOG1637, VOG0054 |
| BBNEDFCG_125 | 39607 | 51018 | False | Siphoviridae | VOG4900, VOG0650, VOG4632, VOG4606, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)