Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 1 | 5.10 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_144 | 2877 | 3362 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| COCFMAFH_118 | 2697 | 4634 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
| COCFMAFH_5 | 2532 | 3302 | ANT(4')-Ia | ARO:3002623 | ANT(4')-Ia | 99.60 | 101.19 | K02551.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COCFMAFH_5 | 2541 | 3302 | aadD | Amikacin, Tobramycin | 99.87 | 100.00 | M19465 |
| COCFMAFH_41 | 174 | 942 | ant(9)-Ia | Spectinomycin | 99.87 | 98.21 | X02588 |
| COCFMAFH_125 | 329 | 1686 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.19 | 98.40 | AY081910 |
| COCFMAFH_144 | 2877 | 3362 | lnu(A) | Lincomycin | 98.97 | 100.00 | M14039 |
| COCFMAFH_118 | 2697 | 4609 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_5 | 2532 | 3299 | aadD1 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ia | EXACTX | 100.00 | 100.00 | WP_032488330.1 |
| COCFMAFH_144 | 2877 | 3359 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| COCFMAFH_118 | 2697 | 4610 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
| COCFMAFH_125 | 349 | 1683 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.10 | 97.16 | WP_002294500.1 |
| COCFMAFH_41 | 174 | 950 | ant(9)-Ia | aminoglycoside nucleotidyltransferase ANT(9)-Ia | INTERNAL_STOP | 98.84 | 99.62 | WP_000067268.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COCFMAFH_72 | 51768 | 51574 | CspA | 1.36e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| COCFMAFH_11 | 35444 | 36482 | repUS67 | 1040 / 1039 | 95.00 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| COCFMAFH_1 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_2 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_3 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_4 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_5 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_6 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_7 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_8 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_9 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_10 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_11 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_12 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_13 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_14 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_15 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_16 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_18 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_19 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_20 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_22 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_23 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_24 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_26 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_27 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_28 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_29 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_30 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_31 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_32 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_33 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_34 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_35 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_36 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_37 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_38 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_39 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_40 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_41 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_42 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_44 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_45 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_46 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_55 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_56 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_57 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_58 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_59 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_60 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_61 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_62 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_63 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_64 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_65 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_66 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_67 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_68 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_69 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_70 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_71 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_72 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_73 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_74 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_75 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_76 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_77 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_78 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_79 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_80 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_81 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_82 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_83 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_84 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_85 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_86 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_87 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_88 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_89 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_90 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_91 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_92 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_93 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_94 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_95 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_96 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_97 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_98 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_99 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_100 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_101 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_102 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_103 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_104 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_105 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_106 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_107 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_108 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_109 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_110 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_111 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_112 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_113 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_114 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_115 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_116 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_117 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_118 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_119 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_120 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_121 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_122 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_123 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_124 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_125 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_126 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_127 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_128 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_129 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_130 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_131 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_132 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_133 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_134 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_135 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_136 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_137 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_138 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_139 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_140 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_141 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_142 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_143 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_144 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_145 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_146 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_147 | 1.0 | 0.0 | 1.0 |
| COCFMAFH_148 | 0.0 | 1.0 | 0.0 |
| COCFMAFH_149 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| COCFMAFH_61 | 67897 | 105686 | False | Siphoviridae | VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG0686, VOG0198, VOG1183, VOG6214, VOG3307, VOG0536, VOG3461, VOG0189, VOG5046, VOG0226, VOG0283, VOG9708, VOG2228, VOG4552, VOG4829, VOG9667, VOG9267, VOG4821, VOG0792, VOG0275, VOG5378 |
| COCFMAFH_116 | 39602 | 51013 | False | Siphoviridae | VOG4900, VOG0650, VOG4632, VOG4606, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)