Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOOGILLL_74 | 8528 | 9013 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| LOOGILLL_98 | 2697 | 4634 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOOGILLL_98 | 2697 | 4609 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
| LOOGILLL_74 | 8528 | 9013 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOOGILLL_74 | 8528 | 9010 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| LOOGILLL_98 | 2697 | 4610 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LOOGILLL_136 | 41916 | 42110 | CspA | 7.06e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LOOGILLL_1 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_2 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_3 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_4 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_5 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_6 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_7 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_8 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_9 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_10 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_11 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_12 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_13 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_15 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_16 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_17 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_18 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_19 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_20 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_21 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_22 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_23 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_24 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_25 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_26 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_27 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_28 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_29 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_30 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_33 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_41 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_42 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_43 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_44 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_45 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_46 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_47 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_48 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_49 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_50 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_51 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_52 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_53 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_54 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_55 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_56 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_57 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_58 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_59 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_60 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_61 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_62 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_63 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_64 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_65 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_66 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_67 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_68 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_69 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_70 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_71 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_72 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_73 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_74 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_75 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_76 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_77 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_78 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_79 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_80 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_81 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_82 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_83 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_84 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_85 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_86 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_87 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_88 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_89 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_90 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_91 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_92 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_93 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_94 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_95 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_96 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_97 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_98 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_99 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_100 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_101 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_102 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_103 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_104 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_105 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_106 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_107 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_108 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_109 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_110 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_111 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_112 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_113 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_114 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_115 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_116 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_117 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_118 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_119 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_120 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_122 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_123 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_124 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_125 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_126 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_127 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_128 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_129 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_130 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_131 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_132 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_133 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_134 | 1.0 | 0.0 | 1.0 |
| LOOGILLL_135 | 0.0 | 1.0 | 0.0 |
| LOOGILLL_136 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LOOGILLL_103 | 39684 | 51095 | False | Siphoviridae | VOG4900, VOG0650, VOG4632, VOG4606, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568 |
Phigaro v2.4.0 (Database: Jan. 2024 release)