Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKHKLAEA_228 | 35990 | 36484 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| CKHKLAEA_202 | 661 | 2598 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CKHKLAEA_228 | 35990 | 36484 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| CKHKLAEA_202 | 686 | 2598 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.85 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CKHKLAEA_202 | 685 | 2598 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
| CKHKLAEA_228 | 35993 | 36484 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CKHKLAEA_184 | 25423 | 25229 | CspA | 9.76e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CKHKLAEA_192 | 3725 | 4501 | rep30 | 777 / 777 | 99.87 | CP002845 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CKHKLAEA_1 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_3 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_4 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_5 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_6 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_7 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_8 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_9 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_10 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_11 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_12 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_13 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_14 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_15 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_16 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_17 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_18 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_19 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_20 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_21 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_22 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_23 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_24 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_25 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_26 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_27 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_28 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_29 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_30 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_31 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_32 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_33 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_34 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_35 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_36 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_37 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_38 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_39 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_40 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_41 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_42 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_43 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_44 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_55 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_66 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_77 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_88 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_99 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_110 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_111 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_122 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_133 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_143 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_144 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_145 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_146 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_147 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_148 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_149 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_150 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_151 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_152 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_153 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_154 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_155 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_156 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_157 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_158 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_159 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_160 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_161 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_162 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_163 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_164 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_165 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_166 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_167 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_168 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_169 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_170 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_171 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_172 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_173 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_174 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_175 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_176 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_177 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_178 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_179 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_180 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_181 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_182 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_183 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_184 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_185 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_186 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_187 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_188 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_189 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_191 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_192 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_193 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_194 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_195 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_196 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_197 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_198 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_199 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_200 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_201 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_202 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_203 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_204 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_205 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_206 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_207 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_208 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_209 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_210 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_211 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_212 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_213 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_214 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_215 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_216 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_217 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_218 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_219 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_220 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_221 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_223 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_224 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_225 | 0.0 | 1.0 | 0.0 |
| CKHKLAEA_227 | 1.0 | 0.0 | 1.0 |
| CKHKLAEA_228 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CKHKLAEA_144 | 4698 | 21872 | False | Siphoviridae | VOG1183, VOG4693, VOG0198, VOG0796, VOG10227, VOG0691, VOG0692, VOG5847, VOG4555, VOG4572, VOG0695, VOG0696, VOG0697, VOG0698, VOG0701 |
Phigaro v2.4.0 (Database: Jan. 2024 release)