Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJGCGHNN_99 | 4243 | 6168 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.31 | AJ222769.3 |
| IJGCGHNN_114 | 1342 | 1827 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IJGCGHNN_114 | 1342 | 1827 | lnu(A) | Lincomycin | 98.97 | 100.00 | M14039 |
| IJGCGHNN_99 | 4243 | 6155 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJGCGHNN_114 | 1345 | 1827 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| IJGCGHNN_99 | 4243 | 6156 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IJGCGHNN_142 | 41870 | 42064 | CspA | 7.12e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJGCGHNN_1 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_3 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_4 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_5 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_6 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_7 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_8 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_9 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_10 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_11 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_12 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_13 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_22 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_33 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_44 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_48 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_49 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_50 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_51 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_52 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_53 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_54 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_55 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_56 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_57 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_58 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_59 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_60 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_61 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_62 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_63 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_64 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_65 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_66 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_67 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_68 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_69 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_70 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_71 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_72 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_73 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_74 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_75 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_76 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_77 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_78 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_79 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_80 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_81 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_82 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_83 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_84 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_85 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_86 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_87 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_88 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_89 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_90 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_91 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_92 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_93 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_94 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_95 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_96 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_97 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_98 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_99 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_100 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_101 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_102 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_103 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_104 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_105 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_106 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_107 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_108 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_109 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_110 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_112 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_113 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_114 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_115 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_116 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_117 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_118 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_119 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_120 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_121 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_122 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_123 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_124 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_125 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_126 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_127 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_128 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_129 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_130 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_131 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_132 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_133 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_134 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_135 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_137 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_138 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_139 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_140 | 1.0 | 0.0 | 1.0 |
| IJGCGHNN_141 | 0.0 | 1.0 | 0.0 |
| IJGCGHNN_142 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJGCGHNN_65 | 40700 | 69488 | False | Siphoviridae | VOG8294, VOG0641, VOG0648, VOG7145, VOG10608, VOG1335, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689, VOG8945, VOG1993 |
| IJGCGHNN_65 | 81547 | 85065 | False | Siphoviridae | VOG4552, VOG2786, VOG8520, VOG0862, VOG3557, VOG0047 |
| IJGCGHNN_109 | 14829 | 39144 | True | Siphoviridae | VOG0052, VOG7438, VOG1047, VOG0021, VOG0026, VOG4606, VOG4606, VOG0327, VOG4548, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641, VOG9502, VOG0221, VOG0221 |
Phigaro v2.4.0 (Database: Jan. 2024 release)