Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBHNNEHA_89 | 9541 | 11460 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
| LBHNNEHA_121 | 1340 | 1825 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| LBHNNEHA_140 | 110 | 847 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBHNNEHA_133 | 4021 | 4887 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF864551 |
| LBHNNEHA_140 | 110 | 847 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | JN899585 |
| LBHNNEHA_89 | 9541 | 11460 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
| LBHNNEHA_121 | 1340 | 1825 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBHNNEHA_133 | 4021 | 4884 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| LBHNNEHA_121 | 1343 | 1825 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| LBHNNEHA_89 | 9544 | 11460 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
| LBHNNEHA_140 | 110 | 844 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002321849.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LBHNNEHA_117 | 25408 | 25214 | CspA | 9.74e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBHNNEHA_1 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_2 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_3 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_4 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_5 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_6 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_7 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_8 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_9 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_10 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_11 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_12 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_13 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_14 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_15 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_17 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_19 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_20 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_22 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_23 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_24 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_26 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_28 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_29 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_30 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_31 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_32 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_33 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_34 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_35 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_36 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_37 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_38 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_39 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_40 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_41 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_42 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_43 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_44 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_45 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_46 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_47 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_48 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_49 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_55 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_66 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_77 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_81 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_82 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_83 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_84 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_85 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_86 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_87 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_88 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_89 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_90 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_91 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_92 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_93 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_94 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_95 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_96 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_97 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_98 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_99 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_100 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_101 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_102 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_103 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_104 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_105 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_106 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_107 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_108 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_109 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_110 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_111 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_112 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_113 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_114 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_115 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_116 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_117 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_118 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_119 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_120 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_121 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_122 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_123 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_124 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_125 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_126 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_127 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_128 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_129 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_130 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_131 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_132 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_133 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_134 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_135 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_136 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_137 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_138 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_139 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_140 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_141 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_142 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_143 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_144 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_145 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_146 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_147 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_148 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_149 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_150 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_152 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_153 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_154 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_155 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_156 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_157 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_158 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_159 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_160 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_161 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_162 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_163 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_164 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_165 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_166 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_167 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_168 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_169 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_170 | 0.0 | 1.0 | 0.0 |
| LBHNNEHA_171 | 1.0 | 0.0 | 1.0 |
| LBHNNEHA_172 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBHNNEHA_11 | 32743 | 56748 | False | Siphoviridae | VOG0686, VOG0689, VOG9503, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163, VOG1335, VOG10608, VOG5007 |
| LBHNNEHA_22 | 16670 | 40276 | True | Siphoviridae | VOG0221, VOG0221, VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG4571, VOG4581, VOG6154, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047, VOG7438 |
| LBHNNEHA_84 | 5701 | 45950 | False | Siphoviridae | VOG4603, VOG4552, VOG2228, VOG7938, VOG7341, VOG1309, VOG10904, VOG0186, VOG4799, VOG0536, VOG4010, VOG6214, VOG3307, VOG0198, VOG0796, VOG4544, VOG0720, VOG4564, VOG10914, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG10972, VOG1050, VOG9997, VOG4856, VOG4334, VOG4705, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)