Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMIAKDNF_94 | 4667 | 6604 | tet(W) | ARO:3000194 | tet(W) | 96.55 | 100.94 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AMIAKDNF_94 | 4692 | 6604 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.90 | 99.64 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AMIAKDNF_94 | 4691 | 6604 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.69 | 99.84 | WP_003672618.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AMIAKDNF_49 | 25845 | 25651 | CspA | 4.98e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| AMIAKDNF_140 | 43713 | 44751 | repUS67 | 1040 / 1039 | 95.48 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AMIAKDNF_1 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_2 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_4 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_5 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_6 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_7 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_8 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_9 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_10 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_11 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_12 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_13 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_14 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_15 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_16 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_17 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_18 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_19 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_20 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_21 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_22 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_33 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_43 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_46 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_47 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_48 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_49 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_50 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_51 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_52 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_53 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_54 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_55 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_56 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_57 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_58 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_59 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_60 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_61 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_62 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_63 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_64 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_65 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_66 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_67 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_68 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_69 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_70 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_71 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_72 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_73 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_74 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_75 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_76 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_77 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_78 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_79 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_80 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_81 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_82 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_83 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_84 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_85 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_86 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_87 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_88 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_89 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_90 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_91 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_92 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_93 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_94 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_95 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_96 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_97 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_98 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_99 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_100 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_101 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_102 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_103 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_104 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_105 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_106 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_107 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_108 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_109 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_110 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_111 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_112 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_113 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_114 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_115 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_116 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_117 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_118 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_119 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_120 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_121 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_122 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_123 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_124 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_125 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_126 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_127 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_128 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_129 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_130 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_131 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_132 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_133 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_134 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_135 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_136 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_137 | 0.0 | 1.0 | 0.0 |
| AMIAKDNF_138 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_139 | 1.0 | 0.0 | 1.0 |
| AMIAKDNF_140 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AMIAKDNF_56 | 12213 | 20177 | False | Siphoviridae | VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198 |
Phigaro v2.4.0 (Database: Jan. 2024 release)