Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFHDCEPI_27 | 17747 | 19174 | fexA | ARO:3002704 | fexA | 97.68 | 100.00 | AJ549214.1 |
| KFHDCEPI_27 | 7352 | 7837 | lnuA | ARO:3002835 | lnuA | 96.89 | 100.00 | M14039.1 |
| KFHDCEPI_54 | 4240 | 6165 | tet(W) | ARO:3000194 | tet(W) | 97.02 | 100.31 | AJ222769.3 |
| KFHDCEPI_62 | 3239 | 5164 | tet(M) | ARO:3000186 | tet(M) | 98.91 | 100.31 | AB039845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KFHDCEPI_62 | 3239 | 5164 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| KFHDCEPI_54 | 4240 | 6152 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 99.64 | FN396364 |
| KFHDCEPI_27 | 17747 | 19174 | fexA | Chloramphenicol, Florfenicol | 98.39 | 100.00 | AJ549214 |
| KFHDCEPI_27 | 7352 | 7837 | lnu(A) | Lincomycin | 98.35 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KFHDCEPI_54 | 4240 | 6153 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 99.84 | WP_000691721.1 |
| KFHDCEPI_62 | 3239 | 5161 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.53 | 100.00 | WP_000691727.1 |
| KFHDCEPI_27 | 7355 | 7837 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | BLASTX | 99.38 | 100.00 | WP_001829870.1 |
| KFHDCEPI_27 | 17747 | 19171 | fexA | chloramphenicol/florfenicol efflux MFS transporter FexA | BLASTX | 97.68 | 100.00 | WP_015585966.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KFHDCEPI_66 | 51263 | 51457 | CspA | 3.20e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KFHDCEPI_1 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_2 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_3 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_4 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_5 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_6 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_7 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_8 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_9 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_10 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_11 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_12 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_13 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_14 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_15 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_16 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_17 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_18 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_19 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_20 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_21 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_22 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_23 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_24 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_25 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_26 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_27 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_28 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_29 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_30 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_31 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_32 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_33 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_34 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_35 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_36 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_37 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_38 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_39 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_40 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_41 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_42 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_43 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_44 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_45 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_46 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_47 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_48 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_49 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_50 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_51 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_52 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_53 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_54 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_55 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_56 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_57 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_58 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_59 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_60 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_61 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_62 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_63 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_64 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_65 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_66 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_67 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_68 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_69 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_70 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_71 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_72 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_73 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_74 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_75 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_76 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_77 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_78 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_79 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_80 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_81 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_83 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_87 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_88 | 0.0 | 1.0 | 0.0 |
| KFHDCEPI_89 | 1.0 | 0.0 | 1.0 |
| KFHDCEPI_96 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KFHDCEPI_16 | 2229 | 11436 | True | Unknown | VOG0641, VOG9502, VOG9409, VOG0221, VOG0221, VOG4548 |
| KFHDCEPI_33 | 54329 | 88350 | False | Siphoviridae | VOG4824, VOG0054, VOG1637, VOG3398, VOG5372, VOG6163, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG4555, VOG7533, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG3307, VOG0327, VOG6165, VOG5278, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG5720, VOG1638, VOG2228, VOG10195, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)