Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 1 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ENPFEMDD_242 | 7499 | 8236 | ErmB | ARO:3000375 | ErmB | 97.96 | 98.79 | AF242872.1 |
| ENPFEMDD_16 | 4283 | 5077 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 99.62 | 100.00 | CP004067.1 |
| ENPFEMDD_15 | 3399 | 5318 | tet(W) | ARO:3000194 | tet(W) | 96.71 | 100.00 | AJ222769.3 |
| ENPFEMDD_16 | 2805 | 3713 | aad(6) | ARO:3002628 | aad(6) | 100.00 | 109.42 | AY712687.1 |
| ENPFEMDD_18 | 2153 | 2638 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| ENPFEMDD_48 | 649 | 2025 | tet(L) | ARO:3000179 | tet(L) | 98.91 | 100.00 | M11036.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ENPFEMDD_16 | 2805 | 3713 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | AF330699 |
| ENPFEMDD_16 | 4283 | 5077 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 99.87 | 100.00 | M26832 |
| ENPFEMDD_48 | 649 | 2025 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.64 | 100.00 | M29725 |
| ENPFEMDD_242 | 7499 | 8236 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | JN899585 |
| ENPFEMDD_15 | 3399 | 5318 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
| ENPFEMDD_18 | 2153 | 2638 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ENPFEMDD_210 | 4041 | 4904 | aadE | aminoglycoside 6-adenylyltransferase AadE | EXACTX | 100.00 | 100.00 | WP_001255868.1 |
| ENPFEMDD_16 | 2805 | 3710 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255866.1 |
| ENPFEMDD_18 | 2156 | 2638 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| ENPFEMDD_15 | 3399 | 5315 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_003672618.1 |
| ENPFEMDD_16 | 4283 | 5074 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | BLASTX | 99.62 | 100.00 | WP_001096887.1 |
| ENPFEMDD_48 | 652 | 2025 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_001574277.1 |
| ENPFEMDD_242 | 7499 | 8233 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002321849.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ENPFEMDD_180 | 20072 | 19878 | CspA | 1.03e-28 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ENPFEMDD_44 | 30373 | 31408 | repUS67 | 1043 / 1039 | 94.82 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ENPFEMDD_1 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_2 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_3 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_4 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_5 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_6 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_7 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_8 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_9 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_10 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_11 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_12 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_13 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_14 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_15 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_16 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_17 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_18 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_19 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_20 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_21 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_22 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_23 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_24 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_25 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_26 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_27 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_28 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_29 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_30 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_31 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_32 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_33 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_34 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_35 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_36 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_37 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_38 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_39 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_40 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_41 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_42 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_43 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_44 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_45 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_46 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_47 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_48 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_49 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_50 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_51 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_52 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_53 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_54 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_55 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_57 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_58 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_59 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_60 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_61 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_62 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_63 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_64 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_65 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_66 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_67 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_68 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_69 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_70 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_72 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_73 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_74 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_75 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_76 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_77 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_79 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_80 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_81 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_82 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_83 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_84 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_85 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_86 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_87 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_88 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_90 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_91 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_92 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_93 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_94 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_95 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_96 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_97 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_99 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_100 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_101 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_102 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_103 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_104 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_105 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_106 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_107 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_108 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_109 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_110 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_111 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_112 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_113 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_114 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_115 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_116 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_117 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_118 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_119 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_120 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_121 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_122 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_123 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_124 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_125 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_126 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_133 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_144 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_155 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_166 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_175 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_176 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_177 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_178 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_179 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_180 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_181 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_182 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_183 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_184 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_185 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_186 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_187 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_188 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_189 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_190 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_191 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_192 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_193 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_194 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_195 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_196 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_197 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_198 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_199 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_200 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_201 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_202 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_203 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_204 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_205 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_206 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_207 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_208 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_209 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_210 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_211 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_212 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_213 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_214 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_215 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_216 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_217 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_218 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_219 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_220 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_221 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_222 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_223 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_224 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_225 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_226 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_227 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_228 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_229 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_230 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_231 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_232 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_233 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_234 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_235 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_236 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_237 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_238 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_239 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_240 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_241 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_242 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_243 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_244 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_245 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_246 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_247 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_248 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_249 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_250 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_251 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_252 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_253 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_254 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_255 | 0.0 | 1.0 | 0.0 |
| ENPFEMDD_256 | 1.0 | 0.0 | 1.0 |
| ENPFEMDD_257 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ENPFEMDD_166 | 827 | 25246 | False | Siphoviridae | VOG0727, VOG0727, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1319, VOG10914, VOG1300, VOG4564, VOG0720, VOG10227, VOG0796, VOG0198, VOG3307, VOG7043, VOG1183, VOG8065, VOG1183, VOG0195, VOG0275, VOG0536, VOG4566, VOG0186, VOG1309, VOG5878, VOG8611, VOG1638 |
| ENPFEMDD_183 | 746 | 18682 | False | Siphoviridae | VOG0689, VOG9503, VOG9503, VOG0796, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4713, VOG1330, VOG1900, VOG0704, VOG4634, VOG1333, VOG1334, VOG6163 |
| ENPFEMDD_213 | 7411 | 9505 | False | Siphoviridae | VOG9997, VOG4626, VOG1637 |
Phigaro v2.4.0 (Database: Jan. 2024 release)