Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 2 | 6.32 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AECCFHOE_105 | 12908 | 14827 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.00 | AB039845.1 |
| AECCFHOE_105 | 11338 | 12714 | tet(L) | ARO:3000179 | tet(L) | 98.69 | 100.00 | M11036.1 |
| AECCFHOE_108 | 7264 | 8127 | ANT(6)-Ia | ARO:3002626 | ANT(6)-Ia | 100.00 | 100.00 | KF648874.1 |
| AECCFHOE_157 | 2318 | 3055 | ErmB | ARO:3000375 | ErmB | 99.18 | 98.79 | AF242872.1 |
| AECCFHOE_153 | 1632 | 2366 | ErmA | ARO:3000347 | ErmA | 85.19 | 100.41 | X03216.1 |
| AECCFHOE_81 | 1437 | 1931 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| AECCFHOE_108 | 7264 | 8127 | ant(6)-Ia | Streptomycin | 100.00 | 100.00 | KF421157 |
| AECCFHOE_157 | 2318 | 3055 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | X72021 |
| AECCFHOE_105 | 11338 | 12714 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.71 | 100.00 | AY081910 |
| AECCFHOE_153 | 1641 | 2366 | erm(A) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 99.18 | EU348758 |
| AECCFHOE_105 | 12908 | 14827 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | AM990992 |
| AECCFHOE_81 | 1437 | 1931 | lnu(C) | Lincomycin | 98.79 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| AECCFHOE_108 | 7267 | 8127 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_002294505.1 |
| AECCFHOE_157 | 2318 | 3052 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | EXACTX | 100.00 | 100.00 | WP_001038795.1 |
| AECCFHOE_105 | 12911 | 14827 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.37 | 100.00 | WP_000691727.1 |
| AECCFHOE_105 | 11341 | 12714 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.13 | 100.00 | WP_002294500.1 |
| AECCFHOE_81 | 1440 | 1931 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
| AECCFHOE_153 | 1638 | 2366 | erm(A) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A) | BLASTX | 85.19 | 100.00 | WP_001072197.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| AECCFHOE_166 | 37559 | 38266 | WalR | 1.98e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| AECCFHOE_66 | 26890 | 26693 | CspR | 7.12e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| AECCFHOE_66 | 26890 | 26696 | CspA | 3.47e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| AECCFHOE_1 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_2 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_3 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_5 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_6 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_7 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_8 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_9 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_10 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_11 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_12 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_13 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_14 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_15 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_16 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_17 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_18 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_20 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_21 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_22 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_25 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_26 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_27 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_28 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_29 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_30 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_32 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_33 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_34 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_35 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_36 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_37 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_38 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_39 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_40 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_41 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_42 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_43 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_44 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_45 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_55 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_66 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_74 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_75 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_76 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_77 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_78 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_79 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_80 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_81 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_82 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_83 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_84 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_85 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_86 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_87 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_88 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_89 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_90 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_91 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_92 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_93 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_94 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_95 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_96 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_97 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_98 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_99 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_100 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_101 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_102 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_103 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_104 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_105 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_106 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_107 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_108 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_109 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_110 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_111 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_112 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_113 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_114 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_115 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_116 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_117 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_118 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_119 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_120 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_121 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_122 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_123 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_124 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_125 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_126 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_127 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_128 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_129 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_130 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_131 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_132 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_133 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_134 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_135 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_136 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_137 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_138 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_139 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_140 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_141 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_142 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_143 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_144 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_145 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_146 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_147 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_148 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_149 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_150 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_151 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_152 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_153 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_154 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_155 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_157 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_158 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_159 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_160 | 0.0 | 1.0 | 0.0 |
| AECCFHOE_161 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_162 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_163 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_165 | 1.0 | 0.0 | 1.0 |
| AECCFHOE_166 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| AECCFHOE_78 | 5787 | 11193 | False | Unknown | VOG6031, VOG5721, VOG0377 |
| AECCFHOE_89 | 38189 | 47426 | False | Siphoviridae | VOG5532, VOG6965, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG3947, VOG4552 |
| AECCFHOE_100 | 3885 | 23849 | False | Siphoviridae | VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG0660, VOG4545, VOG0801, VOG3462, VOG4190, VOG8438 |
Phigaro v2.4.0 (Database: Jan. 2024 release)