Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKGPBHAD_29 | 235659 | 234955 | WalR | 2.76e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PKGPBHAD_22 | 11092 | 11289 | CspR | 3.27e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PKGPBHAD_14 | 3001 | 4040 | rep38 | 1042 / 1104 | 88.77 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PKGPBHAD_1 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_2 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_3 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_4 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_5 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_6 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_7 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_8 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_9 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_10 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_11 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_12 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_13 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_14 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_15 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_16 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_17 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_18 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_19 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_20 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_21 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_22 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_23 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_24 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_25 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_26 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_27 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_28 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_29 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_30 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_31 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_32 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_33 | 0.0 | 1.0 | 0.0 |
| PKGPBHAD_34 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_35 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_36 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_37 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_38 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_39 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_40 | 1.0 | 0.0 | 1.0 |
| PKGPBHAD_41 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)