Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GHEOCLCK_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GHEOCLCK_1 | 37234 | 69650 | False | Siphoviridae | VOG5190, VOG0703, VOG5087, VOG0861, VOG4705, VOG9945, VOG4612, VOG4659, VOG4633, VOG4760, VOG4586, VOG0207, VOG10939, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG6005, VOG0327, VOG7235, VOG2188, VOG3807, VOG6414, VOG3307, VOG6970, VOG3307, VOG4609, VOG4632, VOG6545 |
| GHEOCLCK_1 | 78051 | 80383 | False | Siphoviridae | VOG0010, VOG4602, VOG11003, VOG3459, VOG3711 |
| GHEOCLCK_1 | 1901063 | 1935753 | False | Siphoviridae | VOG8294, VOG0703, VOG8181, VOG0861, VOG4705, VOG5008, VOG5859, VOG4619, VOG0801, VOG4545, VOG0701, VOG9763, VOG0698, VOG0697, VOG0696, VOG0695, VOG1329, VOG4555, VOG5047, VOG0692, VOG0691, VOG4544, VOG0796, VOG3477, VOG0198, VOG4693, VOG11077, VOG5046, VOG0283, VOG0685, VOG1300, VOG4552, VOG4603, VOG6495 |
| GHEOCLCK_1 | 1960291 | 1985978 | False | Siphoviridae | VOG0703, VOG5042, VOG0861, VOG4705, VOG9945, VOG4612, VOG4633, VOG6163, VOG0209, VOG4586, VOG0207, VOG8609, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG4571, VOG1886 |
Phigaro v2.4.0 (Database: Jan. 2024 release)