Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEONOIAP_34 | 17349 | 19268 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OEONOIAP_34 | 17349 | 19268 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.06 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEONOIAP_34 | 17349 | 19265 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.84 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OEONOIAP_32 | 81170 | 81364 | CspA | 5.13e-28 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OEONOIAP_61 | 476 | 1337 | rep31 | 866 / 1155 | 88.22 | DQ489739 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEONOIAP_1 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_2 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_13 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_24 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_25 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_26 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_27 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_28 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_29 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_30 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_31 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_32 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_33 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_34 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_35 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_36 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_37 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_38 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_39 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_40 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_41 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_42 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_43 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_44 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_45 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_46 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_47 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_48 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_49 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_50 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_51 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_52 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_53 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_54 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_55 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_56 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_57 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_58 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_59 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_60 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_61 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_62 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_63 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_64 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_65 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_66 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_67 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_68 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_69 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_70 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_71 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_72 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_73 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_74 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_75 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_76 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_77 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_78 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_79 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_80 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_81 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_82 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_83 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_84 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_85 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_86 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_87 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_88 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_89 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_90 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_91 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_92 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_93 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_94 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_95 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_96 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_97 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_98 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_99 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_100 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_101 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_102 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_103 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_104 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_105 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_106 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_107 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_108 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_109 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_111 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_112 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_113 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_114 | 0.0 | 1.0 | 0.0 |
| OEONOIAP_115 | 1.0 | 0.0 | 1.0 |
| OEONOIAP_117 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OEONOIAP_1 | 92600 | 112194 | False | Unknown | VOG0648, VOG8355, VOG10609, VOG6540, VOG5534, VOG7628, VOG7629, VOG6036, VOG6941, VOG6246, VOG6524, VOG6031, VOG5721, VOG0377 |
| OEONOIAP_2 | 1781 | 20042 | False | Siphoviridae | VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1900, VOG1330, VOG4713, VOG1887, VOG3434, VOG4555, VOG4564, VOG0720, VOG4544, VOG0796, VOG9503, VOG0689 |
| OEONOIAP_2 | 26805 | 31061 | False | Myoviridae | VOG5133, VOG0189, VOG5046, VOG0226, VOG0283, VOG9708, VOG7341 |
| OEONOIAP_2 | 31197 | 34145 | False | Unknown | VOG0550, VOG4552, VOG6495 |
| OEONOIAP_37 | 5417 | 30389 | False | Siphoviridae | VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG3307, VOG8065, VOG1183, VOG7043, VOG3307, VOG0198, VOG8946, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG1319, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545 |
Phigaro v2.4.0 (Database: Jan. 2024 release)