Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMDHPJAF_41 | 52626 | 53120 | lnuC | ARO:3002837 | lnuC | 97.56 | 100.00 | AY928180.1 |
| LMDHPJAF_12 | 5547 | 7466 | tet(W) | ARO:3000194 | tet(W) | 97.03 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LMDHPJAF_41 | 52626 | 53120 | lnu(C) | Lincomycin | 98.99 | 100.00 | AY928180 |
| LMDHPJAF_12 | 5547 | 7466 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LMDHPJAF_12 | 5547 | 7463 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.53 | 100.00 | WP_000691721.1 |
| LMDHPJAF_41 | 52629 | 53120 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 97.56 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LMDHPJAF_1 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_2 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_3 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_4 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_5 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_6 | 1.0 | 0.0 | 1.0 |
| LMDHPJAF_7 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_8 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_9 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_10 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_11 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_12 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_13 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_14 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_15 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_16 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_17 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_18 | 1.0 | 0.0 | 1.0 |
| LMDHPJAF_19 | 1.0 | 0.0 | 1.0 |
| LMDHPJAF_20 | 1.0 | 0.0 | 1.0 |
| LMDHPJAF_21 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_22 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_23 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_24 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_25 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_26 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_27 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_28 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_29 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_31 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_32 | 1.0 | 0.0 | 1.0 |
| LMDHPJAF_33 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_34 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_38 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_39 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_40 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_41 | 0.0 | 1.0 | 0.0 |
| LMDHPJAF_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LMDHPJAF_6 | 4373 | 38919 | False | Siphoviridae | VOG3478, VOG9708, VOG0322, VOG10904, VOG4548, VOG6545, VOG4606, VOG4567, VOG3307, VOG4711, VOG0327, VOG6005, VOG4966, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG10939, VOG0207, VOG4586, VOG0660, VOG4545, VOG4633, VOG4659, VOG6540 |
Phigaro v2.4.0 (Database: Jan. 2024 release)